Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PANA_RS15410 Genome accession   NC_013956
Coordinates   3407672..3408742 (-) Length   356 a.a.
NCBI ID   WP_013026905.1    Uniprot ID   D4GLE8
Organism   Pantoea ananatis LMG 20103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3402672..3413742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PANA_RS15395 (PANA_3031) csrA 3403851..3404036 (-) 186 WP_006120718.1 carbon storage regulator CsrA -
  PANA_RS15400 (PANA_3032) alaS 3404287..3406914 (-) 2628 WP_013026903.1 alanine--tRNA ligase -
  PANA_RS15405 (PANA_3033) - 3407046..3407558 (-) 513 WP_014594422.1 regulatory protein RecX -
  PANA_RS15410 (PANA_3034) recA 3407672..3408742 (-) 1071 WP_013026905.1 recombinase RecA Machinery gene
  PANA_RS15415 (PANA_3035) pncC 3408838..3409332 (-) 495 WP_013026906.1 nicotinamide-nucleotide amidase -
  PANA_RS15420 (PANA_3036) tam 3409433..3410209 (-) 777 WP_014594424.1 trans-aconitate 2-methyltransferase -
  PANA_RS15425 (PANA_3037) - 3410393..3410728 (-) 336 WP_014605175.1 zinc ribbon domain-containing protein YjdM -
  PANA_RS15430 (PANA_3038) mltB 3410804..3411886 (-) 1083 WP_013026909.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37948.49 Da        Isoelectric Point: 5.0504

>NTDB_id=36723 PANA_RS15410 WP_013026905.1 3407672..3408742(-) (recA) [Pantoea ananatis LMG 20103]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQV
IAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYKGDKIGQGKANAGNFLKENAAVAEEL
DIKLREMLLNGGDQNIAADVAGNDVEKAASEANEDY

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=36723 PANA_RS15410 WP_013026905.1 3407672..3408742(-) (recA) [Pantoea ananatis LMG 20103]
ATGGCAATTGATGAAAACAAACAGAAGGCTTTAGCTGCCGCGCTCGGCCAGATTGAGAAGCAATTTGGTAAAGGCTCCAT
CATGCGCTTGGGTGAAGACCGCTCAATGGATGTGGAAACCATTTCAACGGGTTCTCTGTCACTGGATATCGCATTAGGTG
CGGGTGGTTTACCGATGGGACGTATCGTTGAGATCTACGGCCCAGAGGCCTCAGGTAAAACGACACTGACACTTCAGGTT
ATTGCCGCCGCGCAGCGTAAGGGCAAAACCTGTGCCTTTATCGATGCCGAGCACGCACTGGATCCCATCTATGCTAAGAA
ACTGGGCGTAGATATCGACAATCTGCTGTGTTCACAGCCGGATACCGGTGAGCAGGCCCTGGAAATTTGTGATGCGCTGG
CCCGCTCTGGTGCCGTTGACGTCATTATCGTTGACTCCGTAGCTGCACTGACGCCAAAAGCCGAAATCGAAGGTGAAATC
GGTGACTCACACATGGGCCTGGCGGCACGTATGATGAGCCAGGCAATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCTAA
TACGCTGCTGATCTTCATCAACCAGATTCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAGTTCTACGCTTCTGTTCGCCTTGATATTCGCCGTATCGGTGCGATTAAAGAGGGTGACAACGTGGTGGGT
AGTGAAACGCGCGTTAAAGTCGTTAAGAACAAAATTGCAGCGCCATTTAAACAGGCTGAGTTCCAGATCATGTACGGCGA
AGGCATTAACACCTTCGGTGAGCTGGTGGATCTTGGCGTGAAGCACAAGCTGATTGAAAAAGCCGGTGCATGGTACAGCT
ATAAAGGCGATAAGATCGGTCAGGGCAAGGCAAACGCGGGCAACTTCCTCAAAGAAAATGCCGCGGTGGCCGAGGAGCTT
GATATCAAACTGCGTGAAATGCTGCTTAACGGTGGCGATCAAAACATCGCGGCGGACGTTGCAGGCAACGACGTTGAGAA
GGCGGCGAGCGAAGCCAACGAAGATTATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4GLE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.235

98.034

0.806
  recA Vibrio cholerae strain A1552

82.235

98.034

0.806
  recA Pseudomonas stutzeri DSM 10701

71.47

97.472

0.697
  recA Acinetobacter baylyi ADP1

71.006

94.944

0.674
  recA Acinetobacter baumannii D1279779

72.727

92.697

0.674
  recA Glaesserella parasuis strain SC1401

66.952

98.596

0.66
  recA Neisseria gonorrhoeae MS11

66.071

94.382

0.624
  recA Neisseria gonorrhoeae MS11

66.071

94.382

0.624
  recA Neisseria gonorrhoeae strain FA1090

66.071

94.382

0.624
  recA Ralstonia pseudosolanacearum GMI1000

69.775

87.36

0.61
  recA Helicobacter pylori strain NCTC11637

62.385

91.854

0.573
  recA Helicobacter pylori 26695

62.08

91.854

0.57
  recA Streptococcus mitis SK321

62.229

90.73

0.565
  recA Lactococcus lactis subsp. cremoris KW2

62.229

90.73

0.565
  recA Streptococcus mitis NCTC 12261

61.92

90.73

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.292

0.559
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

90.169

0.559
  recA Streptococcus pneumoniae Rx1

61.61

90.73

0.559
  recA Streptococcus pneumoniae R6

61.61

90.73

0.559
  recA Streptococcus pneumoniae TIGR4

61.61

90.73

0.559
  recA Streptococcus pneumoniae D39

61.61

90.73

0.559
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.382

89.607

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.258

0.556
  recA Streptococcus pyogenes NZ131

60.923

91.292

0.556
  recA Streptococcus mutans UA159

60.923

91.292

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.306

89.045

0.528

Multiple sequence alignment