Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FGD67_RS05265 Genome accession   NZ_CP040755
Coordinates   1165507..1166541 (-) Length   344 a.a.
NCBI ID   WP_257174008.1    Uniprot ID   -
Organism   Colwellia sp. M166     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1160507..1171541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGD67_RS05245 (FGD67_05160) - 1161335..1161871 (+) 537 WP_257174004.1 redoxin domain-containing protein -
  FGD67_RS05250 (FGD67_05165) arsB 1162239..1163270 (+) 1032 WP_257174005.1 ACR3 family arsenite efflux transporter -
  FGD67_RS05255 (FGD67_05170) - 1163419..1164066 (-) 648 WP_257174006.1 response regulator transcription factor -
  FGD67_RS05260 (FGD67_05175) - 1164237..1165331 (-) 1095 WP_257174007.1 XdhC family protein -
  FGD67_RS05265 (FGD67_05180) recA 1165507..1166541 (-) 1035 WP_257174008.1 recombinase RecA Machinery gene
  FGD67_RS05270 (FGD67_05185) mutS 1166884..1169451 (+) 2568 WP_257174009.1 DNA mismatch repair protein MutS -
  FGD67_RS05275 (FGD67_05190) rpoS 1169534..1170460 (-) 927 WP_257174010.1 RNA polymerase sigma factor RpoS -
  FGD67_RS05280 (FGD67_05195) - 1170554..1171270 (-) 717 WP_257174011.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37179.82 Da        Isoelectric Point: 6.1717

>NTDB_id=367020 FGD67_RS05265 WP_257174008.1 1165507..1166541(-) (recA) [Colwellia sp. M166]
MNDNKEKALSAALSQIERQFGKGSIMKLGDNRSMDVETISTGSLGLDIALGAGGLPLGRVVEIYGPESSGKTTLTLEVIA
EAQRNGKVCAFVDAEHALDPIYAEKLGVNINELLVSQPDTGEQALEICDMLTRSGAIDIIVVDSVAALTPKAEIEGDMGD
SHMGLQARMLSQAMRKLTGNLKQSNTMIIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKNGDEIVGNE
TRVKVVKNKIAPPFKQVEFQILYGEGINSLGELVDLGVKHEMVEKAGAWYSYKGDKIGQGKANAAKHLKENPEIAKEIDT
RLRELLLSKNKVVEVTDKVEAPAK

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=367020 FGD67_RS05265 WP_257174008.1 1165507..1166541(-) (recA) [Colwellia sp. M166]
ATGAACGATAACAAAGAAAAAGCATTATCAGCTGCCTTAAGCCAAATCGAACGTCAATTCGGTAAAGGTTCAATTATGAA
GTTAGGTGATAATCGCAGCATGGATGTTGAAACTATTTCAACGGGTTCATTAGGTTTAGATATCGCACTGGGTGCTGGTG
GTTTGCCGCTTGGACGTGTTGTCGAAATTTACGGTCCAGAATCAAGTGGTAAAACCACATTAACACTGGAAGTTATTGCA
GAAGCACAGCGCAATGGTAAGGTTTGTGCCTTTGTTGATGCTGAGCATGCTCTCGACCCAATTTATGCTGAAAAACTCGG
TGTAAATATTAATGAGTTATTAGTTTCTCAGCCTGATACCGGTGAGCAAGCGCTTGAGATTTGTGACATGTTAACACGCT
CAGGTGCTATCGATATTATCGTTGTTGACTCGGTTGCTGCTTTAACACCAAAAGCTGAAATTGAAGGCGATATGGGCGAC
TCACATATGGGTTTACAAGCTCGTATGCTTTCACAAGCGATGCGTAAGTTAACGGGTAACCTTAAACAATCGAACACGAT
GATTATTTTCATTAACCAAATTCGTATGAAAATTGGTGTTATGTTTGGTTCACCAGAAACTACCACCGGTGGTAATGCGT
TAAAATTCTACGCCTCTGTACGTTTAGATATTCGCCGTATTGGTGCGGTTAAAAATGGTGATGAAATAGTCGGTAACGAA
ACCCGTGTTAAAGTGGTTAAGAACAAAATTGCGCCACCATTTAAACAAGTTGAATTTCAAATTTTGTATGGCGAAGGTAT
TAACAGCTTAGGTGAGTTGGTTGACTTAGGTGTTAAGCATGAAATGGTTGAAAAAGCGGGTGCTTGGTATAGCTATAAAG
GCGATAAAATTGGCCAAGGTAAAGCAAATGCTGCTAAGCATTTGAAAGAAAACCCTGAAATAGCCAAAGAGATCGATACG
CGCTTACGTGAGTTATTATTATCAAAAAATAAAGTGGTTGAAGTAACAGATAAAGTTGAAGCACCAGCTAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.927

95.349

0.791
  recA Vibrio cholerae strain A1552

82.927

95.349

0.791
  recA Acinetobacter baumannii D1279779

72.807

99.419

0.724
  recA Acinetobacter baylyi ADP1

75.076

95.64

0.718
  recA Pseudomonas stutzeri DSM 10701

74.924

95.058

0.712
  recA Glaesserella parasuis strain SC1401

70.149

97.384

0.683
  recA Neisseria gonorrhoeae MS11

71.779

94.767

0.68
  recA Neisseria gonorrhoeae MS11

71.779

94.767

0.68
  recA Neisseria gonorrhoeae strain FA1090

71.779

94.767

0.68
  recA Ralstonia pseudosolanacearum GMI1000

70.418

90.407

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.204

92.733

0.605
  recA Helicobacter pylori strain NCTC11637

61.062

98.547

0.602
  recA Helicobacter pylori 26695

60.767

98.547

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

61.934

96.221

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.078

97.093

0.593
  recA Streptococcus pneumoniae TIGR4

61.92

93.895

0.581
  recA Streptococcus mitis NCTC 12261

61.92

93.895

0.581
  recA Streptococcus pneumoniae D39

61.92

93.895

0.581
  recA Streptococcus pneumoniae R6

61.92

93.895

0.581
  recA Streptococcus pneumoniae Rx1

61.92

93.895

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.241

96.512

0.581
  recA Streptococcus mitis SK321

61.61

93.895

0.578
  recA Streptococcus mutans UA159

59.939

95.058

0.57
  recA Streptococcus pyogenes NZ131

59.021

95.058

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

57.944

93.314

0.541
  recA Lactococcus lactis subsp. cremoris KW2

57.585

93.895

0.541

Multiple sequence alignment