Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HMU_RS01055 Genome accession   NC_013949
Coordinates   225635..226678 (-) Length   347 a.a.
NCBI ID   WP_041913037.1    Uniprot ID   -
Organism   Helicobacter mustelae 12198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 220635..231678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMU_RS01030 (HMU01820) - 221344..222543 (+) 1200 WP_013022539.1 NAD(P)/FAD-dependent oxidoreductase -
  HMU_RS01035 (HMU01830) - 222926..223417 (-) 492 WP_013022540.1 shikimate kinase -
  HMU_RS01040 (HMU01840) - 223471..224073 (-) 603 WP_013022541.1 AMIN domain-containing protein -
  HMU_RS01050 (HMU01860) eno 224311..225585 (-) 1275 WP_013022543.1 phosphopyruvate hydratase -
  HMU_RS01055 (HMU01870) recA 225635..226678 (-) 1044 WP_041913037.1 recombinase RecA Machinery gene
  HMU_RS01060 (HMU01880) - 227134..228051 (+) 918 WP_013022545.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  HMU_RS01065 (HMU01890) - 228045..229025 (+) 981 WP_013022546.1 iron ABC transporter permease -
  HMU_RS01070 (HMU01900) - 229025..229783 (+) 759 WP_013022547.1 ABC transporter ATP-binding protein -
  HMU_RS01075 (HMU01910) flgG 229837..230625 (+) 789 WP_013022548.1 flagellar basal-body rod protein FlgG -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37895.64 Da        Isoelectric Point: 5.1980

>NTDB_id=36702 HMU_RS01055 WP_041913037.1 225635..226678(-) (recA) [Helicobacter mustelae 12198]
MMVDEQKKKAIELALKQIDKTFGKGALVRLGDKQVEKIEAISTGSLGLDLALGINGIPKGRIIEIYGPESSGKTTLSLQI
VAECQRNGGICAFIDAEHALDVYYAKRLGVDTENLLVSQPDNGEQALEILETLTRSGAVDLVVIDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDIRRIATLKQADQQI
GNRVKAKVVKNKVAPPFREAEFDIMFGEGISIEGEIIDYGIKLDIIDKSGAWLSYGDKKLGQGRENAKLLLKEDKTLAAE
ITQKIREQINATDEILPLPDEPENEVE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=36702 HMU_RS01055 WP_041913037.1 225635..226678(-) (recA) [Helicobacter mustelae 12198]
ATTATGGTGGATGAACAGAAGAAAAAGGCCATAGAATTGGCACTCAAACAAATTGACAAAACCTTTGGAAAGGGCGCGCT
TGTAAGGTTAGGAGACAAGCAAGTAGAAAAAATTGAAGCGATTTCTACAGGATCACTGGGATTGGATCTAGCCCTTGGAA
TCAATGGCATCCCCAAGGGCAGAATCATTGAAATTTATGGCCCAGAGTCTAGTGGCAAAACCACTTTAAGCTTACAAATC
GTAGCAGAATGCCAACGCAATGGTGGCATATGCGCATTCATTGATGCAGAGCATGCACTTGATGTGTATTATGCTAAGCG
CTTGGGCGTGGATACCGAAAATCTACTCGTCAGCCAGCCAGATAATGGCGAGCAGGCGCTAGAGATTTTGGAGACGCTTA
CACGCAGTGGAGCCGTGGATTTGGTGGTAATTGATTCTGTGGCTGCACTTACCCCAAAGGCTGAGATTGATGGGGACATG
GGCGATCAGCATGTGGGATTGCAAGCAAGGCTTATGAGTCATGCTCTACGCAAGATCACAGGGGTTTTGCACAAGATGAA
CACCACTTTGATCTTCATCAATCAAATTCGCATGAAAATCGGGACCATGGGCTATGGAAGCCCAGAGACTACCACGGGAG
GGAATGCGCTGAAATTTTATGCTAGCGTGAGGATTGACATCCGCCGCATCGCAACACTCAAACAAGCAGACCAACAAATT
GGTAATCGCGTCAAGGCAAAGGTGGTGAAAAACAAGGTCGCTCCACCATTTCGAGAAGCAGAATTTGACATTATGTTTGG
CGAGGGGATCAGCATTGAGGGAGAGATTATTGATTATGGGATTAAGCTAGATATCATCGACAAAAGCGGCGCATGGCTAA
GCTATGGAGACAAGAAACTAGGCCAGGGAAGGGAGAATGCCAAGCTCTTGCTCAAAGAAGACAAGACCCTTGCAGCAGAG
ATCACCCAAAAAATTCGCGAGCAAATCAATGCCACTGATGAAATCCTGCCACTACCTGATGAACCAGAAAATGAAGTAGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

87.32

100

0.873
  recA Helicobacter pylori 26695

87.032

100

0.87
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.841

94.236

0.715
  recA Acinetobacter baylyi ADP1

62.319

99.424

0.62
  recA Acinetobacter baumannii D1279779

62.682

98.847

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.772

96.254

0.614
  recA Neisseria gonorrhoeae MS11

65.231

93.66

0.611
  recA Neisseria gonorrhoeae strain FA1090

65.231

93.66

0.611
  recA Neisseria gonorrhoeae MS11

65.231

93.66

0.611
  recA Bacillus subtilis subsp. subtilis str. 168

64.286

92.795

0.597
  recA Pseudomonas stutzeri DSM 10701

62.727

95.101

0.597
  recA Glaesserella parasuis strain SC1401

63.077

93.66

0.591
  recA Ralstonia pseudosolanacearum GMI1000

65.079

90.778

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.162

94.236

0.576
  recA Vibrio cholerae strain A1552

61.162

94.236

0.576
  recA Streptococcus mitis SK321

58.735

95.677

0.562
  recA Streptococcus mitis NCTC 12261

58.434

95.677

0.559
  recA Streptococcus pyogenes NZ131

59.509

93.948

0.559
  recA Lactococcus lactis subsp. cremoris KW2

59.692

93.66

0.559
  recA Streptococcus pneumoniae Rx1

58.133

95.677

0.556
  recA Streptococcus pneumoniae D39

58.133

95.677

0.556
  recA Streptococcus pneumoniae R6

58.133

95.677

0.556
  recA Streptococcus pneumoniae TIGR4

58.133

95.677

0.556
  recA Streptococcus mutans UA159

57.485

96.254

0.553
  recA Latilactobacillus sakei subsp. sakei 23K

54.913

99.712

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.622

94.524

0.545

Multiple sequence alignment