Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FF125_RS21625 Genome accession   NZ_CP040749
Coordinates   5115073..5116080 (-) Length   335 a.a.
NCBI ID   WP_117880140.1    Uniprot ID   -
Organism   Aureibaculum algae strain 10Alg 115     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5110073..5121080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FF125_RS21600 (FF125_21600) - 5110787..5111170 (-) 384 WP_138952265.1 DUF4296 domain-containing protein -
  FF125_RS21605 (FF125_21605) - 5111273..5112616 (-) 1344 WP_138952267.1 dihydroorotase -
  FF125_RS21610 (FF125_21610) - 5112690..5113409 (-) 720 WP_138952269.1 polyprenol monophosphomannose synthase -
  FF125_RS21615 (FF125_21615) - 5113486..5114142 (+) 657 WP_138952270.1 DUF4271 domain-containing protein -
  FF125_RS21620 (FF125_21620) - 5114264..5115007 (+) 744 WP_138952272.1 uroporphyrinogen-III synthase -
  FF125_RS21625 (FF125_21625) recA 5115073..5116080 (-) 1008 WP_117880140.1 recombinase RecA Machinery gene
  FF125_RS21630 (FF125_21630) - 5116457..5117041 (-) 585 WP_138952274.1 NUDIX domain-containing protein -
  FF125_RS21635 (FF125_21635) - 5117028..5117480 (-) 453 WP_138952276.1 GNAT family N-acetyltransferase -
  FF125_RS21640 (FF125_21640) rpiB 5117482..5117913 (-) 432 WP_138952278.1 ribose 5-phosphate isomerase B -
  FF125_RS21645 (FF125_21645) - 5118604..5119905 (+) 1302 WP_138952280.1 T9SS type A sorting domain-containing protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36247.65 Da        Isoelectric Point: 5.8342

>NTDB_id=366991 FF125_RS21625 WP_117880140.1 5115073..5116080(-) (recA) [Aureibaculum algae strain 10Alg 115]
MAEDKEKAAKLKALQLTLDKLDKTYGKGSVMRLGDDVAEDIEAIPSGSLGLDIALGVGGYPRGRVIEIYGPESSGKTTLT
LHAIAEAQKAGGIAAFIDAEHAFDRYYAQNLGIDIDNLIISQPDHGEQALEIADNLIRSGAIDIVVIDSVAALTPKSEIE
GEMGDSKMGLHARLMSQALRKLTGTISKTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRRTQIKDGDR
VIGNSTKVKVVKNKVAPPFRMAEFDIMYGEGISKVGEILDIGVELGIIKKSGSWFSYGETKLGQGRDAVKSLIKDNPDLA
EELEGKILVEINKEK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=366991 FF125_RS21625 WP_117880140.1 5115073..5116080(-) (recA) [Aureibaculum algae strain 10Alg 115]
ATGGCAGAAGACAAAGAAAAAGCAGCAAAACTAAAGGCTTTACAATTAACTTTAGATAAATTAGATAAGACATACGGAAA
AGGTTCAGTAATGCGTTTAGGAGACGATGTTGCGGAAGATATTGAAGCAATTCCATCTGGTTCTTTAGGATTAGATATAG
CTTTAGGTGTTGGTGGTTATCCAAGAGGTAGAGTAATAGAAATTTATGGACCAGAATCTTCAGGTAAAACAACATTAACC
TTACATGCAATAGCAGAAGCTCAGAAAGCTGGAGGAATTGCGGCATTTATTGATGCAGAACACGCTTTTGATAGATATTA
TGCACAGAATTTAGGTATTGATATTGATAATTTAATTATCTCACAACCAGATCATGGAGAACAAGCTTTAGAAATAGCTG
ATAATTTAATTAGATCAGGAGCTATTGATATTGTGGTAATTGATTCAGTTGCTGCACTTACACCAAAAAGTGAAATTGAA
GGTGAAATGGGTGATTCTAAAATGGGTTTACATGCTCGTTTAATGTCTCAGGCTTTGCGTAAACTTACTGGAACTATAAG
TAAAACAAAATGTACTGTAATATTTATTAACCAATTGCGTGAAAAAATTGGTGTAATGTTCGGTAACCCGGAAACTACTA
CTGGTGGTAATGCCTTAAAATTTTATGCATCTGTTCGTTTAGATATTAGACGTAGAACACAAATTAAAGATGGTGATAGA
GTTATAGGTAATAGTACTAAGGTAAAAGTGGTTAAAAACAAAGTAGCACCGCCTTTCCGAATGGCTGAATTTGATATTAT
GTATGGTGAAGGTATTTCTAAAGTTGGTGAAATACTAGATATTGGCGTAGAATTAGGTATTATTAAGAAAAGTGGTTCTT
GGTTTAGTTATGGTGAGACCAAATTAGGACAAGGTAGAGATGCTGTAAAATCTTTAATTAAAGATAATCCTGATTTAGCA
GAAGAATTAGAAGGTAAAATTCTAGTAGAGATCAATAAAGAAAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

79.012

96.716

0.764
  recA Ralstonia pseudosolanacearum GMI1000

65.152

98.507

0.642
  recA Glaesserella parasuis strain SC1401

65.528

96.119

0.63
  recA Helicobacter pylori strain NCTC11637

64.024

97.91

0.627
  recA Helicobacter pylori 26695

63.72

97.91

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

68.078

91.642

0.624
  recA Acinetobacter baylyi ADP1

65.723

94.925

0.624
  recA Neisseria gonorrhoeae MS11

63.415

97.91

0.621
  recA Neisseria gonorrhoeae strain FA1090

63.415

97.91

0.621
  recA Neisseria gonorrhoeae MS11

63.415

97.91

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.714

94.03

0.618
  recA Acinetobacter baumannii D1279779

65.094

94.925

0.618
  recA Lactococcus lactis subsp. cremoris KW2

62.346

96.716

0.603
  recA Latilactobacillus sakei subsp. sakei 23K

61.774

97.612

0.603
  recA Streptococcus mitis NCTC 12261

61.585

97.91

0.603
  recA Streptococcus mitis SK321

61.585

97.91

0.603
  recA Streptococcus pyogenes NZ131

61.656

97.313

0.6
  recA Streptococcus pneumoniae R6

61.728

96.716

0.597
  recA Streptococcus pneumoniae D39

61.728

96.716

0.597
  recA Streptococcus pneumoniae TIGR4

61.728

96.716

0.597
  recA Streptococcus pneumoniae Rx1

61.728

96.716

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.264

94.925

0.591
  recA Vibrio cholerae strain A1552

62.264

94.925

0.591
  recA Pseudomonas stutzeri DSM 10701

61.95

94.925

0.588
  recA Streptococcus mutans UA159

60.681

96.418

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.386

95.821

0.54

Multiple sequence alignment