Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DACET_RS14005 Genome accession   NC_013943
Coordinates   2957472..2958503 (-) Length   343 a.a.
NCBI ID   WP_083772429.1    Uniprot ID   -
Organism   Denitrovibrio acetiphilus DSM 12809     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2952472..2963503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DACET_RS13985 (Dacet_2771) lpxC 2953917..2954825 (-) 909 WP_041230002.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  DACET_RS13990 (Dacet_2772) dnaB 2955134..2956468 (-) 1335 WP_013012019.1 replicative DNA helicase -
  DACET_RS13995 (Dacet_2773) rplI 2956470..2956913 (-) 444 WP_013012020.1 50S ribosomal protein L9 -
  DACET_RS15800 (Dacet_2774) - 2956910..2957383 (-) 474 WP_013012021.1 regulatory protein RecX -
  DACET_RS14005 (Dacet_2775) recA 2957472..2958503 (-) 1032 WP_083772429.1 recombinase RecA Machinery gene
  DACET_RS14015 (Dacet_2777) - 2958808..2959821 (-) 1014 WP_013012023.1 sugar phosphate nucleotidyltransferase -
  DACET_RS16065 (Dacet_2778) - 2959959..2960075 (+) 117 Protein_2786 transposase -
  DACET_RS14020 (Dacet_2779) - 2960173..2961015 (-) 843 WP_013012024.1 class I SAM-dependent methyltransferase -
  DACET_RS14025 (Dacet_2780) - 2961016..2961384 (-) 369 WP_013012025.1 EamA family transporter -
  DACET_RS14030 (Dacet_2781) rffA 2961381..2962511 (-) 1131 WP_013012026.1 dTDP-4-amino-4,6-dideoxygalactose transaminase -
  DACET_RS14035 (Dacet_2782) - 2962498..2963205 (-) 708 WP_013012027.1 WbqC family protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36859.53 Da        Isoelectric Point: 6.1756

>NTDB_id=36669 DACET_RS14005 WP_083772429.1 2957472..2958503(-) (recA) [Denitrovibrio acetiphilus DSM 12809]
MMDQDKQKALDAAMGKIEKDFGKGAVMRLGDKPVEKLPVIPSGILSLDIALGVGGFPRGRIIEIYGAESSGKTTIALHAI
AEAQKLGGAAAFVDAEHALDPIYAKAIGVDTDNLIVSQPDSGEVALEITETLVRSGAIDIIVVDSVAALTPRAEIEGEMG
DSHMGLQARLMSQALRKLTSIVNKSKTTLVFINQTRSKIGVVYGNPETTTGGNALKFYASMRLEIKKTQALKEKEEVVGN
HGLAKVVKNKVAPPFKTAEFDILYGVGVSREGLLIDMGVDAGFVNKAGAWFSYNDAKLGQGKENSRTYLKENPEIAQEIE
DKIRTKLGMIEPIILPPEDEKKK

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=36669 DACET_RS14005 WP_083772429.1 2957472..2958503(-) (recA) [Denitrovibrio acetiphilus DSM 12809]
ATGATGGATCAGGATAAGCAGAAAGCCTTAGACGCAGCTATGGGCAAAATTGAGAAAGACTTTGGAAAAGGTGCTGTCAT
GCGCCTTGGCGATAAACCGGTGGAAAAGCTCCCTGTCATCCCTTCGGGTATACTGTCTCTTGACATTGCACTTGGTGTTG
GCGGTTTTCCGCGCGGACGTATCATAGAGATTTACGGTGCGGAATCCTCCGGTAAGACAACCATCGCACTCCATGCCATT
GCAGAAGCACAGAAACTTGGCGGGGCGGCGGCATTTGTTGATGCAGAACATGCTCTTGACCCTATCTATGCAAAAGCTAT
CGGTGTCGATACTGATAACCTCATTGTGTCGCAGCCGGACAGTGGCGAGGTGGCTCTTGAAATAACAGAAACACTTGTAA
GAAGCGGTGCCATCGACATAATCGTTGTGGATTCCGTTGCGGCACTTACGCCACGTGCAGAGATCGAAGGTGAAATGGGC
GACTCCCACATGGGGCTTCAGGCAAGGCTTATGTCTCAGGCACTCAGAAAGCTCACCAGTATTGTAAATAAATCAAAAAC
CACACTTGTCTTCATTAACCAGACAAGGTCTAAGATCGGTGTTGTCTATGGAAACCCGGAAACAACAACAGGCGGTAACG
CCCTTAAGTTCTATGCTTCCATGAGACTGGAGATCAAAAAAACTCAGGCTCTGAAAGAGAAAGAAGAAGTTGTTGGTAAT
CACGGTCTTGCTAAAGTTGTTAAAAACAAAGTTGCACCGCCGTTCAAAACAGCAGAATTCGATATCCTTTATGGTGTCGG
TGTTTCCCGTGAGGGACTGCTTATTGATATGGGTGTTGACGCAGGTTTTGTCAATAAGGCTGGAGCATGGTTCAGCTATA
ACGATGCGAAGCTCGGACAGGGGAAAGAGAACTCCAGAACTTATCTGAAGGAAAACCCTGAGATAGCTCAGGAGATAGAG
GATAAAATACGAACTAAGCTTGGTATGATTGAGCCGATAATCCTCCCCCCTGAAGATGAAAAGAAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.396

99.417

0.65
  recA Neisseria gonorrhoeae strain FA1090

63.824

99.125

0.633
  recA Neisseria gonorrhoeae MS11

63.824

99.125

0.633
  recA Neisseria gonorrhoeae MS11

63.824

99.125

0.633
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.314

98.542

0.624
  recA Vibrio cholerae strain A1552

63.314

98.542

0.624
  recA Helicobacter pylori strain NCTC11637

63.127

98.834

0.624
  recA Helicobacter pylori 26695

62.832

98.834

0.621
  recA Pseudomonas stutzeri DSM 10701

64.724

95.044

0.615
  recA Acinetobacter baumannii D1279779

64.417

95.044

0.612
  recA Acinetobacter baylyi ADP1

64.11

95.044

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.84

96.501

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

62.462

94.752

0.592
  recA Streptococcus pyogenes NZ131

60.976

95.627

0.583
  recA Streptococcus pneumoniae TIGR4

60.121

96.501

0.58
  recA Streptococcus pneumoniae Rx1

60.121

96.501

0.58
  recA Streptococcus pneumoniae D39

60.121

96.501

0.58
  recA Streptococcus pneumoniae R6

60.121

96.501

0.58
  recA Streptococcus mutans UA159

59.819

96.501

0.577
  recA Streptococcus mitis NCTC 12261

59.517

96.501

0.574
  recA Latilactobacillus sakei subsp. sakei 23K

58.112

98.834

0.574
  recA Ralstonia pseudosolanacearum GMI1000

62.939

91.254

0.574
  recA Streptococcus mitis SK321

59.215

96.501

0.571
  recA Glaesserella parasuis strain SC1401

60.185

94.461

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.125

93.586

0.563
  recA Lactococcus lactis subsp. cremoris KW2

56.798

96.501

0.548

Multiple sequence alignment