Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DEFDS_RS00190 Genome accession   NC_013939
Coordinates   44403..45419 (-) Length   338 a.a.
NCBI ID   WP_013006798.1    Uniprot ID   D3PAC7
Organism   Deferribacter desulfuricans SSM1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 39403..50419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEFDS_RS00165 (DEFDS_0033) lpxC 39994..40902 (-) 909 WP_013006793.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  DEFDS_RS00170 (DEFDS_0034) dnaB 41079..42410 (-) 1332 WP_013006794.1 replicative DNA helicase -
  DEFDS_RS00175 (DEFDS_0035) rplI 42397..42843 (-) 447 WP_013006795.1 50S ribosomal protein L9 -
  DEFDS_RS00180 (DEFDS_0036) - 42906..43304 (-) 399 WP_013006796.1 regulatory protein RecX -
  DEFDS_RS00185 (DEFDS_0037) - 43288..44406 (-) 1119 WP_013006797.1 type IV pilus twitching motility protein PilT -
  DEFDS_RS00190 (DEFDS_0038) recA 44403..45419 (-) 1017 WP_013006798.1 recombinase RecA Machinery gene
  DEFDS_RS00195 (DEFDS_0039) thpR 45412..45987 (-) 576 WP_013006799.1 RNA 2',3'-cyclic phosphodiesterase -
  DEFDS_RS00200 (DEFDS_0040) - 45980..47194 (-) 1215 WP_013006800.1 competence/damage-inducible protein A -
  DEFDS_RS00205 (DEFDS_0041) - 47191..47640 (-) 450 WP_013006801.1 phosphatidylglycerophosphatase A -
  DEFDS_RS00210 (DEFDS_0042) hisA 47650..48366 (-) 717 WP_013006802.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase -
  DEFDS_RS00215 (DEFDS_0043) hisH 48360..48974 (-) 615 WP_013006803.1 imidazole glycerol phosphate synthase subunit HisH -
  DEFDS_RS00220 (DEFDS_0044) hisB 48975..49556 (-) 582 WP_013006804.1 imidazoleglycerol-phosphate dehydratase HisB -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36290.74 Da        Isoelectric Point: 6.1744

>NTDB_id=36633 DEFDS_RS00190 WP_013006798.1 44403..45419(-) (recA) [Deferribacter desulfuricans SSM1]
MDENKKKALELAMSKIERDFGKGAVMRLGDKAIEKPPVIPTGALSLDIALGVGGIPRGRITEIYGSESSGKTTVALHVIA
EAQKMGGVAAFIDAEHALDPVYAEAIGVNTDELLISQPDSGEAALEIAETLVRSGAVDVVVVDSVAALTPKAEIEGDMGD
AHMGLQARLMSQALRKLTAIVNKSKTALIFINQTRQKIGVMFGNPETTTGGNALKFYATIRIEIRRTSSLKDKDQVVGNQ
VICKVVKNKVAPPFKQAEFDILFGEGISKEGVLIDMGIKEGLINKAGAWFSYGDIRLGQGKENARSYLKEHPEIAQEIEE
KIRSKYGLAENISGENKS

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=36633 DEFDS_RS00190 WP_013006798.1 44403..45419(-) (recA) [Deferribacter desulfuricans SSM1]
ATGGATGAAAATAAGAAAAAAGCTTTAGAGCTCGCAATGAGCAAAATTGAAAGAGATTTTGGTAAAGGCGCAGTTATGCG
ACTTGGTGATAAAGCGATAGAAAAGCCGCCAGTAATACCTACAGGTGCTTTATCCCTCGACATTGCACTTGGAGTAGGTG
GTATTCCAAGAGGTAGAATAACCGAAATATATGGTAGTGAATCAAGTGGTAAAACAACTGTTGCTTTACATGTTATCGCA
GAAGCTCAAAAAATGGGTGGGGTAGCTGCATTTATAGATGCAGAACATGCACTGGACCCTGTCTATGCAGAAGCAATCGG
AGTGAATACCGACGAACTTCTCATCAGCCAACCGGATAGCGGTGAAGCTGCTTTAGAAATAGCTGAAACTTTAGTCAGAA
GTGGAGCTGTAGATGTTGTGGTAGTAGATTCTGTGGCCGCTTTAACTCCAAAAGCAGAAATTGAAGGGGATATGGGTGAT
GCCCATATGGGCCTTCAGGCAAGACTTATGAGTCAGGCACTTAGAAAATTAACTGCTATTGTTAATAAATCAAAAACTGC
TCTGATATTTATAAACCAAACAAGACAAAAAATAGGAGTAATGTTTGGCAATCCAGAAACCACAACAGGTGGAAATGCTT
TAAAATTTTATGCTACAATTAGAATAGAAATTAGAAGGACATCTTCATTGAAAGATAAAGATCAGGTTGTAGGTAATCAG
GTTATCTGCAAAGTAGTAAAAAATAAAGTGGCTCCACCATTTAAGCAAGCAGAATTTGATATATTATTTGGAGAAGGGAT
CTCTAAAGAAGGCGTACTAATTGATATGGGGATAAAAGAAGGGTTAATAAACAAAGCAGGTGCTTGGTTTAGCTATGGGG
ATATAAGGCTCGGACAAGGTAAAGAAAATGCAAGGAGCTATCTAAAAGAACATCCTGAAATAGCTCAAGAGATAGAAGAA
AAAATCAGATCAAAATATGGGTTAGCAGAAAACATATCTGGAGAGAATAAATCATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3PAC7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.478

99.112

0.639
  recA Helicobacter pylori 26695

64.865

98.521

0.639
  recA Helicobacter pylori strain NCTC11637

64.565

98.521

0.636
  recA Streptococcus pneumoniae Rx1

63.018

100

0.63
  recA Streptococcus pneumoniae TIGR4

63.018

100

0.63
  recA Streptococcus pneumoniae R6

63.018

100

0.63
  recA Streptococcus pneumoniae D39

63.018

100

0.63
  recA Bacillus subtilis subsp. subtilis str. 168

64.939

97.041

0.63
  recA Pseudomonas stutzeri DSM 10701

65.538

96.154

0.63
  recA Neisseria gonorrhoeae strain FA1090

63.772

98.817

0.63
  recA Neisseria gonorrhoeae MS11

63.772

98.817

0.63
  recA Neisseria gonorrhoeae MS11

63.772

98.817

0.63
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.952

98.225

0.618
  recA Vibrio cholerae strain A1552

62.952

98.225

0.618
  recA Glaesserella parasuis strain SC1401

63.526

97.337

0.618
  recA Streptococcus mitis NCTC 12261

62.388

99.112

0.618
  recA Streptococcus mitis SK321

62.09

99.112

0.615
  recA Streptococcus mutans UA159

61.357

100

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.03

97.633

0.615
  recA Streptococcus pyogenes NZ131

62.918

97.337

0.612
  recA Acinetobacter baumannii D1279779

62.154

96.154

0.598
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.928

94.97

0.598
  recA Acinetobacter baylyi ADP1

61.538

96.154

0.592
  recA Latilactobacillus sakei subsp. sakei 23K

60.671

97.041

0.589
  recA Lactococcus lactis subsp. cremoris KW2

59.819

97.929

0.586
  recA Ralstonia pseudosolanacearum GMI1000

62.939

92.604

0.583

Multiple sequence alignment