Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FBF22_RS08080 Genome accession   NZ_CP040618
Coordinates   1584975..1586006 (-) Length   343 a.a.
NCBI ID   WP_002884219.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN093260     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1579975..1591006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF22_RS08025 (FBF22_08035) - 1580149..1580586 (-) 438 WP_002858990.1 DUF411 domain-containing protein -
  FBF22_RS08030 (FBF22_08040) - 1580867..1581292 (-) 426 WP_002884223.1 hypothetical protein -
  FBF22_RS08060 (FBF22_08070) - 1581969..1582816 (-) 848 Protein_1570 DNA ligase -
  FBF22_RS08065 (FBF22_08075) cgpA 1582816..1583472 (-) 657 WP_002884222.1 glycoprotein CgpA -
  FBF22_RS08070 (FBF22_08080) - 1583462..1583665 (-) 204 WP_002839177.1 hypothetical protein -
  FBF22_RS08075 (FBF22_08085) eno 1583731..1584975 (-) 1245 WP_002856489.1 phosphopyruvate hydratase -
  FBF22_RS08080 (FBF22_08090) recA 1584975..1586006 (-) 1032 WP_002884219.1 recombinase RecA Machinery gene
  FBF22_RS08085 (FBF22_08095) - 1586112..1586972 (+) 861 WP_002856256.1 menaquinone biosynthesis family protein -
  FBF22_RS08090 (FBF22_08100) fliQ 1586984..1587253 (+) 270 WP_002851290.1 flagellar biosynthesis protein FliQ -
  FBF22_RS08095 (FBF22_08105) - 1587250..1588026 (+) 777 WP_002884217.1 UDP-N-acetylmuramate dehydrogenase -
  FBF22_RS08100 (FBF22_08110) - 1588050..1588820 (-) 771 WP_074482806.1 hypothetical protein -
  FBF22_RS08105 (FBF22_08115) - 1588861..1589625 (-) 765 WP_002868269.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FBF22_RS08110 (FBF22_08120) - 1589705..1590973 (-) 1269 WP_002851494.1 citrate synthase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36991.24 Da        Isoelectric Point: 5.0719

>NTDB_id=365798 FBF22_RS08080 WP_002884219.1 1584975..1586006(-) (recA) [Campylobacter sp. CFSAN093260]
MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSVGLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIA
ECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGN
RVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEIT
KAIQNSMGIEGMISGSEDGEGEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=365798 FBF22_RS08080 WP_002884219.1 1584975..1586006(-) (recA) [Campylobacter sp. CFSAN093260]
ATGGATGATAATAAAAGAAAATCTCTAGACGCTGCCCTAAAAAGTTTAGATAAAACCTTTGGAAAAGGCACTATTTTAAG
ACTAGGGGATAAAGAAGTCGAGCAAATCGATAGCATAGGCACAGGTTCAGTTGGGCTTGATCTTGCTTTAGGTATAGGCG
GTGTTCCAAAAGGAAGAATTATAGAAATTTATGGACCTGAAAGTTCAGGTAAAACCACTCTAACTTTACATATTATCGCA
GAATGCCAAAAAGCAGGTGGAGTTTGTGCTTTTATCGATGCAGAACATGCGCTTGATGTAAAATATGCTAAAAATTTGGG
TGTAAATACAGATGATTTGTATGTTTCTCAGCCTGATTTTGGAGAACAAGCCTTAGAAATTGTAGAAACTATAGCAAGAA
GTGGCGCAGTAGATCTTATCGTAGTAGATAGCGTTGCAGCACTTACTCCAAAAGCAGAAATTGAAGGCGATATGGGCGAT
CAACATGTAGGACTTCAAGCAAGACTTATGTCTCAAGCTCTAAGAAAACTTACAGGTATAGTTCATAAAATGAATACCAC
AGTAATTTTCATCAACCAAATTCGTATGAAAATTGGTGCTATGGGTTATGGCACTCCTGAAACTACAACAGGTGGAAATG
CATTAAAATTCTATGCTTCTGTGCGTTTAGATGTTAGAAAAGTAGCAACCTTAAAACAAAACGAAGAACCTATAGGAAAC
CGCGTTAAAGTAAAAGTAGTTAAAAATAAAGTTGCTCCTCCATTCAGACAAGCTGAATTTGATGTGATGTTTGGAGAGGG
TTTAAGCCGTGAAGGTGAATTGATCGATTATGGTGTAAAACTTGATATCGTAGATAAAAGTGGTGCGTGGTTTTCTTATA
AAGATAAAAAACTTGGACAAGGTAGAGAAAATTCAAAAGCTTTCTTAAAAGAAAACCCTGAAATTGCAGATGAAATCACA
AAAGCAATTCAAAATTCTATGGGAATAGAAGGTATGATCAGCGGTAGCGAAGATGGCGAAGGAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.708

100

0.997
  recA Helicobacter pylori 26695

79.268

95.627

0.758
  recA Helicobacter pylori strain NCTC11637

78.963

95.627

0.755
  recA Neisseria gonorrhoeae MS11

65.294

99.125

0.647
  recA Neisseria gonorrhoeae MS11

65.294

99.125

0.647
  recA Neisseria gonorrhoeae strain FA1090

65.294

99.125

0.647
  recA Glaesserella parasuis strain SC1401

65.031

95.044

0.618
  recA Acinetobacter baylyi ADP1

64.832

95.335

0.618
  recA Pseudomonas stutzeri DSM 10701

64.832

95.335

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.855

96.793

0.618
  recA Vibrio cholerae strain A1552

64.506

94.461

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.506

94.461

0.609
  recA Acinetobacter baumannii D1279779

63.914

95.335

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

63.914

95.335

0.609
  recA Ralstonia pseudosolanacearum GMI1000

64.984

92.42

0.601
  recA Streptococcus pneumoniae D39

58.824

99.125

0.583
  recA Streptococcus pneumoniae TIGR4

58.824

99.125

0.583
  recA Streptococcus pneumoniae Rx1

58.824

99.125

0.583
  recA Streptococcus pneumoniae R6

58.824

99.125

0.583
  recA Streptococcus mitis NCTC 12261

58.235

99.125

0.577
  recA Streptococcus mitis SK321

57.647

99.125

0.571
  recA Streptococcus pyogenes NZ131

58.788

96.21

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

59.021

95.335

0.563
  recA Streptococcus mutans UA159

57.704

96.501

0.557
  recA Lactococcus lactis subsp. cremoris KW2

57.447

95.918

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.177

92.128

0.545

Multiple sequence alignment