Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FBF11_RS08105 Genome accession   NZ_CP040607
Coordinates   1578643..1579674 (-) Length   343 a.a.
NCBI ID   WP_002851424.1    Uniprot ID   A0AB36GB76
Organism   Campylobacter sp. CFSAN093224     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1573643..1584674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF11_RS08050 (FBF11_08105) - 1573822..1574259 (-) 438 WP_002851451.1 DUF411 domain-containing protein -
  FBF11_RS08055 (FBF11_08110) - 1574558..1574974 (-) 417 WP_002851144.1 hypothetical protein -
  FBF11_RS08085 (FBF11_08140) - 1575630..1576478 (-) 849 WP_002888836.1 DNA ligase -
  FBF11_RS08090 (FBF11_08145) cgpA 1576478..1577140 (-) 663 WP_002867529.1 glycoprotein CgpA -
  FBF11_RS08095 (FBF11_08150) - 1577130..1577333 (-) 204 WP_002839177.1 hypothetical protein -
  FBF11_RS08100 (FBF11_08155) eno 1577399..1578643 (-) 1245 WP_002856489.1 phosphopyruvate hydratase -
  FBF11_RS08105 (FBF11_08160) recA 1578643..1579674 (-) 1032 WP_002851424.1 recombinase RecA Machinery gene
  FBF11_RS08110 (FBF11_08165) - 1579780..1580640 (+) 861 WP_002858996.1 menaquinone biosynthesis family protein -
  FBF11_RS08115 (FBF11_08170) fliQ 1580652..1580921 (+) 270 WP_002851290.1 flagellar biosynthesis protein FliQ -
  FBF11_RS08120 (FBF11_08175) - 1580918..1581694 (+) 777 WP_002874559.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37049.27 Da        Isoelectric Point: 4.9784

>NTDB_id=365577 FBF11_RS08105 WP_002851424.1 1578643..1579674(-) (recA) [Campylobacter sp. CFSAN093224]
MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSVGLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIA
ECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGN
RVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEIT
KAIQNSMGIEGMISGSEDDEGEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=365577 FBF11_RS08105 WP_002851424.1 1578643..1579674(-) (recA) [Campylobacter sp. CFSAN093224]
ATGGATGATAATAAAAGAAAATCTCTAGACGCTGCCCTAAAAAGTTTAGATAAAACCTTTGGAAAAGGCACTATTTTAAG
ACTAGGGGATAAAGAAGTCGAGCAAATCGATAGCATAGGCACAGGTTCAGTTGGGCTTGATCTTGCTTTAGGTATAGGCG
GTGTTCCAAAAGGAAGAATTATAGAAATTTATGGACCTGAAAGTTCAGGTAAAACCACTCTAACTTTACATATTATCGCA
GAATGCCAAAAAGCAGGTGGAGTTTGTGCTTTTATCGATGCAGAACATGCGCTTGATGTAAAATATGCTAAAAATTTGGG
TGTAAATACAGATGATTTGTATGTTTCTCAGCCTGATTTTGGAGAACAAGCCTTAGAAATTGTAGAAACTATAGCAAGAA
GTGGCGCAGTAGATCTTATCGTAGTAGATAGCGTTGCAGCACTTACTCCAAAAGCAGAAATTGAAGGCGATATGGGCGAT
CAACATGTAGGACTTCAAGCAAGACTTATGTCTCAAGCTCTAAGAAAACTTACAGGTATAGTTCATAAAATGAATACCAC
AGTAATTTTTATCAACCAAATTCGTATGAAAATCGGTGCTATGGGTTATGGTACTCCTGAAACTACAACAGGTGGAAATG
CATTAAAATTCTATGCTTCTGTGCGTTTAGATGTTAGAAAAGTAGCAACCTTAAAACAAAACGAAGAACCTATAGGAAAC
CGCGTTAAAGTAAAAGTAGTTAAAAATAAAGTTGCTCCTCCATTCAGACAAGCTGAATTTGATGTGATGTTTGGAGAGGG
TTTAAGCCGTGAAGGTGAATTGATCGATTATGGTGTAAAACTTGATATCGTAGATAAAAGTGGTGCGTGGTTTTCTTATA
AAGATAAAAAACTTGGACAAGGTAGAGAAAATTCAAAAGCTTTCTTAAAAGAAAACCCTGAAATTGCAGATGAAATCACA
AAAGCAATTCAAAATTCTATGGGAATAGAAGGTATGATCAGCGGTAGCGAAGATGACGAAGGAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1
  recA Helicobacter pylori 26695

79.268

95.627

0.758
  recA Helicobacter pylori strain NCTC11637

78.963

95.627

0.755
  recA Neisseria gonorrhoeae MS11

65.103

99.417

0.647
  recA Neisseria gonorrhoeae MS11

65.103

99.417

0.647
  recA Neisseria gonorrhoeae strain FA1090

65.103

99.417

0.647
  recA Acinetobacter baylyi ADP1

62.974

100

0.63
  recA Acinetobacter baumannii D1279779

61.808

100

0.618
  recA Glaesserella parasuis strain SC1401

65.031

95.044

0.618
  recA Pseudomonas stutzeri DSM 10701

64.832

95.335

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.855

96.793

0.618
  recA Ralstonia pseudosolanacearum GMI1000

63.72

95.627

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.506

94.461

0.609
  recA Vibrio cholerae strain A1552

64.506

94.461

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

63.914

95.335

0.609
  recA Streptococcus pneumoniae Rx1

58.824

99.125

0.583
  recA Streptococcus pneumoniae D39

58.824

99.125

0.583
  recA Streptococcus pneumoniae R6

58.824

99.125

0.583
  recA Streptococcus pneumoniae TIGR4

58.824

99.125

0.583
  recA Streptococcus mitis SK321

57.647

99.125

0.571
  recA Streptococcus mitis NCTC 12261

58.967

95.918

0.566
  recA Streptococcus pyogenes NZ131

58.788

96.21

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

59.021

95.335

0.563
  recA Streptococcus mutans UA159

57.704

96.501

0.557
  recA Lactococcus lactis subsp. cremoris KW2

57.447

95.918

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.177

92.128

0.545

Multiple sequence alignment