Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HMPREF0868_RS05200 Genome accession   NC_013895
Coordinates   1164235..1165386 (-) Length   383 a.a.
NCBI ID   WP_012993659.1    Uniprot ID   -
Organism   Mageeibacillus indolicus UPII9-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1159235..1170386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0868_RS05180 - 1159448..1161418 (-) 1971 WP_041705692.1 ABC transporter substrate-binding protein -
  HMPREF0868_RS05185 (HMPREF0868_0635) pgsA 1161440..1162033 (-) 594 WP_012993656.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HMPREF0868_RS05190 (HMPREF0868_0634) rimO 1162050..1163411 (-) 1362 WP_012993657.1 30S ribosomal protein S12 methylthiotransferase RimO -
  HMPREF0868_RS05195 (HMPREF0868_0633) - 1163408..1164235 (-) 828 WP_012993658.1 regulatory protein RecX -
  HMPREF0868_RS05200 (HMPREF0868_0632) recA 1164235..1165386 (-) 1152 WP_012993659.1 recombinase RecA Machinery gene
  HMPREF0868_RS05205 (HMPREF0868_0631) murJ 1165520..1167376 (-) 1857 WP_049779009.1 murein biosynthesis integral membrane protein MurJ -
  HMPREF0868_RS05215 (HMPREF0868_0630) - 1167366..1168709 (-) 1344 WP_012993661.1 competence/damage-inducible protein A -
  HMPREF0868_RS05220 (HMPREF0868_0629) folD 1168694..1169563 (-) 870 WP_012993662.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41194.60 Da        Isoelectric Point: 4.9522

>NTDB_id=36533 HMPREF0868_RS05200 WP_012993659.1 1164235..1165386(-) (recA) [Mageeibacillus indolicus UPII9-5]
MAKAEKKIKSKQEVKPIAQNERAKALEIALDKIEEQFGKGSIMKLGEQSDTDVRAISTGALALDIALGVGGLPRGRIVEI
YGPESSGKTTVALHCIAEAQKTGGTAAFVDAEHALDPIYAEHLGVNIDELLVSQPDTGEEALEITEALVRSGAVDIIVID
SVAALVPKAEIDGEMGDSHVGLHARLMSQALRKLAGIISKSQTVVIFINQLRDKVGVVYGSPEVTTGGRALKFYASVRID
VRKGETIKNGSDLIGNRTKIKVVKNKMAPPFREAEFDILFGEGISREGSILDVATTLGIVKRSGTWFSYNDLRLGQGRDN
ARTYLKENKDLCNEIDQAVRESLHNSNHKTTAETTGDDDHPGETANASTDTPDLDDLLGLDEI

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=36533 HMPREF0868_RS05200 WP_012993659.1 1164235..1165386(-) (recA) [Mageeibacillus indolicus UPII9-5]
ATGGCAAAAGCAGAAAAAAAGATCAAGTCCAAACAAGAGGTTAAACCGATCGCTCAGAATGAACGTGCTAAAGCTTTAGA
GATTGCGCTTGACAAGATTGAGGAGCAATTCGGCAAAGGCTCGATTATGAAGTTAGGGGAGCAAAGTGACACTGATGTAC
GAGCTATTTCCACTGGTGCCCTAGCCTTAGATATAGCTCTTGGAGTTGGCGGACTGCCCCGTGGCCGAATTGTTGAGATC
TATGGACCCGAGTCTTCCGGTAAGACGACTGTCGCCTTGCACTGCATAGCGGAGGCACAAAAAACGGGTGGTACGGCAGC
ATTCGTTGATGCCGAGCATGCACTTGATCCTATTTACGCCGAACACCTTGGTGTCAACATAGATGAATTACTTGTATCAC
AACCGGATACAGGAGAAGAGGCGTTGGAAATAACGGAAGCTCTGGTACGCTCCGGTGCGGTCGATATTATAGTTATCGAC
TCAGTTGCTGCCCTTGTGCCTAAAGCGGAGATTGACGGTGAGATGGGAGACAGCCATGTTGGCTTACATGCGCGACTTAT
GTCTCAAGCTTTGCGAAAACTGGCCGGCATTATCAGTAAATCACAAACTGTGGTTATTTTTATTAACCAGTTGCGCGATA
AAGTAGGCGTCGTTTATGGTAGTCCTGAAGTAACCACCGGTGGTCGGGCCTTGAAATTCTACGCATCGGTTCGTATTGAT
GTGCGCAAGGGAGAGACTATCAAAAACGGTAGCGATTTAATAGGTAATCGTACCAAAATAAAAGTTGTGAAAAATAAAAT
GGCCCCGCCGTTCCGTGAAGCTGAATTTGATATATTGTTCGGTGAGGGTATCAGCCGTGAGGGTTCAATTTTAGATGTAG
CAACCACACTTGGAATTGTTAAACGCAGTGGAACTTGGTTCTCCTACAATGATTTGCGCTTAGGACAAGGAAGAGATAAT
GCTAGAACCTATCTGAAAGAAAATAAAGACTTGTGCAATGAAATTGATCAGGCGGTGCGTGAATCCCTCCATAACAGTAA
CCATAAAACAACCGCTGAAACTACCGGCGATGATGATCACCCCGGCGAGACGGCAAATGCTTCAACCGACACCCCCGACT
TGGATGATTTGCTCGGCTTGGATGAAATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

68.389

85.901

0.587
  recA Streptococcus mitis SK321

58.115

99.739

0.58
  recA Streptococcus mitis NCTC 12261

58.115

99.739

0.58
  recA Streptococcus pneumoniae D39

57.216

100

0.58
  recA Streptococcus pneumoniae R6

57.216

100

0.58
  recA Streptococcus pneumoniae TIGR4

57.216

100

0.58
  recA Streptococcus pneumoniae Rx1

57.216

100

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

66.358

84.595

0.561
  recA Lactococcus lactis subsp. cremoris KW2

66.358

84.595

0.561
  recA Glaesserella parasuis strain SC1401

59.28

94.256

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.952

86.684

0.546
  recA Streptococcus pyogenes NZ131

61.652

88.512

0.546
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.357

88.512

0.543
  recA Vibrio cholerae strain A1552

61.357

88.512

0.543
  recA Ralstonia pseudosolanacearum GMI1000

66.559

81.201

0.54
  recA Streptococcus mutans UA159

60.767

88.512

0.538
  recA Pseudomonas stutzeri DSM 10701

60.534

87.99

0.533
  recA Acinetobacter baylyi ADP1

59.649

89.295

0.533
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.154

84.856

0.527
  recA Neisseria gonorrhoeae MS11

62.733

84.073

0.527
  recA Neisseria gonorrhoeae MS11

62.733

84.073

0.527
  recA Neisseria gonorrhoeae strain FA1090

62.733

84.073

0.527
  recA Helicobacter pylori strain NCTC11637

62.037

84.595

0.525
  recA Helicobacter pylori 26695

61.728

84.595

0.522
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.702

88.512

0.52
  recA Acinetobacter baumannii D1279779

61.18

84.073

0.514

Multiple sequence alignment