Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EYS05_RS10940 Genome accession   NZ_CP040518
Coordinates   2371687..2372739 (+) Length   350 a.a.
NCBI ID   WP_118513041.1    Uniprot ID   -
Organism   Blautia sp. SC05B48     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2366687..2377739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYS05_RS10925 (EYS05_10925) - 2366998..2368623 (+) 1626 WP_138277159.1 polysaccharide biosynthesis protein -
  EYS05_RS10930 (EYS05_10930) pepT 2368757..2369983 (-) 1227 WP_118513127.1 peptidase T -
  EYS05_RS10935 (EYS05_10935) uraA 2370217..2371422 (+) 1206 WP_180214278.1 uracil permease -
  EYS05_RS10940 (EYS05_10940) recA 2371687..2372739 (+) 1053 WP_118513041.1 recombinase RecA Machinery gene
  EYS05_RS10945 (EYS05_10945) - 2372743..2373231 (+) 489 WP_118513042.1 regulatory protein RecX -
  EYS05_RS10950 (EYS05_10950) rny 2373405..2374964 (+) 1560 WP_021650814.1 ribonuclease Y -
  EYS05_RS10955 (EYS05_10955) - 2375094..2375702 (+) 609 WP_138277160.1 stage II sporulation protein M -
  EYS05_RS10960 (EYS05_10960) xerD 2375882..2376766 (+) 885 WP_138277161.1 site-specific tyrosine recombinase XerD -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37878.18 Da        Isoelectric Point: 5.0870

>NTDB_id=364925 EYS05_RS10940 WP_118513041.1 2371687..2372739(+) (recA) [Blautia sp. SC05B48]
MISEEKQKALEAALGNIEKQFGKGSVMKLGDSSSHMQVEAVPTGCLSLDIALGVGGVPKGRIVEIYGPESSGKTTVALHM
VAEVQKRGGIAGFIDAEHALDPVYAKSIGVDIDNLYISQPDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIEGDM
GDSHVGLQARLMSQALRKLTAVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRVETLKQGGEMVG
NHTRVKVVKNKVAPPFKQAEFDIMFGTGISREGDILDLAAECSIVNKSGAWYAYEGDKIGQGRENAKLFLREHPEIRDEI
EKKVRVHYHLDPADETAEAAVQADDTEKEE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=364925 EYS05_RS10940 WP_118513041.1 2371687..2372739(+) (recA) [Blautia sp. SC05B48]
ATGATCAGTGAAGAGAAGCAGAAGGCGTTGGAAGCGGCCCTTGGAAATATTGAGAAACAGTTCGGTAAAGGCTCTGTCAT
GAAGCTTGGAGATTCCAGCTCCCATATGCAGGTGGAGGCAGTTCCCACAGGATGCTTAAGCCTGGATATCGCCCTTGGTG
TAGGTGGTGTTCCCAAGGGACGTATCGTGGAGATCTACGGACCGGAGTCCAGTGGTAAGACAACGGTAGCCTTACATATG
GTCGCTGAGGTGCAGAAGAGAGGCGGAATCGCAGGATTTATCGATGCGGAGCATGCTCTTGATCCTGTTTATGCCAAGAG
TATAGGTGTTGATATCGACAACCTTTATATTTCACAGCCGGATAACGGAGAGCAGGCGCTGGAGATCACAGAGACTATGG
TACGTTCCGGTGCTGTGGATATCGTGATTGTGGATTCTGTTGCAGCTCTGGTTCCCAAGGCAGAGATCGAAGGAGATATG
GGAGACAGCCATGTAGGTCTGCAGGCCCGTCTGATGTCACAGGCACTCCGTAAACTGACGGCTGTTATCAGCAAGTCCAA
TTGCGTGGTGATCTTTATCAACCAGCTTCGTGAGAAGGTTGGAGTGATGTTTGGCAATCCGGAAACTACAACCGGTGGAC
GTGCGCTGAAATTCTATGCATCTGTCCGTATGGATGTACGTCGTGTGGAAACCTTGAAGCAGGGTGGTGAGATGGTCGGA
AACCACACCCGTGTGAAAGTAGTTAAGAACAAGGTCGCTCCGCCATTTAAGCAGGCAGAGTTTGATATCATGTTCGGAAC
CGGTATTTCCAGAGAGGGAGATATCCTGGATCTGGCTGCAGAATGCTCCATCGTAAACAAGAGCGGAGCCTGGTATGCAT
ATGAAGGGGATAAGATCGGACAGGGACGTGAGAATGCCAAATTATTCCTGAGAGAGCATCCGGAGATCCGCGATGAGATT
GAGAAGAAGGTTCGTGTACATTATCATCTGGATCCGGCAGATGAGACAGCAGAAGCAGCAGTACAGGCAGATGATACAGA
GAAGGAAGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.113

93.429

0.646
  recA Latilactobacillus sakei subsp. sakei 23K

62.079

100

0.631
  recA Vibrio cholerae strain A1552

63.506

99.429

0.631
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.506

99.429

0.631
  recA Streptococcus pneumoniae D39

62.784

100

0.631
  recA Streptococcus pneumoniae Rx1

62.784

100

0.631
  recA Streptococcus pneumoniae R6

62.784

100

0.631
  recA Streptococcus pneumoniae TIGR4

62.784

100

0.631
  recA Streptococcus mitis NCTC 12261

62.323

100

0.629
  recA Streptococcus mutans UA159

64.307

96.857

0.623
  recA Glaesserella parasuis strain SC1401

63.45

97.714

0.62
  recA Acinetobacter baylyi ADP1

62.356

99.429

0.62
  recA Pseudomonas stutzeri DSM 10701

64.286

96

0.617
  recA Acinetobacter baumannii D1279779

62.248

99.143

0.617
  recA Streptococcus mitis SK321

63.127

96.857

0.611
  recA Neisseria gonorrhoeae MS11

65.741

92.571

0.609
  recA Neisseria gonorrhoeae strain FA1090

65.741

92.571

0.609
  recA Neisseria gonorrhoeae MS11

65.741

92.571

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.538

92.857

0.609
  recA Streptococcus pyogenes NZ131

64.438

94

0.606
  recA Lactococcus lactis subsp. cremoris KW2

64.242

94.286

0.606
  recA Ralstonia pseudosolanacearum GMI1000

66.456

90.286

0.6
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

93.714

0.591
  recA Helicobacter pylori strain NCTC11637

63.385

92.857

0.589
  recA Helicobacter pylori 26695

63.077

92.857

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.3

92.286

0.566

Multiple sequence alignment