Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FFA29_RS11000 Genome accession   NZ_CP040507
Coordinates   2192062..2193111 (-) Length   349 a.a.
NCBI ID   WP_004511129.1    Uniprot ID   A0A0G9KSN3
Organism   Aliarcobacter butzleri JV22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2187062..2198111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFA29_RS10975 - 2188332..2188844 (+) 513 WP_004511124.1 YfcE family phosphodiesterase -
  FFA29_RS10980 - 2188834..2189682 (+) 849 WP_004511125.1 biotin synthase -
  FFA29_RS10985 - 2189705..2190415 (-) 711 WP_004511126.1 AMIN domain-containing protein -
  FFA29_RS10990 - 2190412..2190657 (-) 246 WP_004511127.1 FtsB family cell division protein -
  FFA29_RS10995 eno 2190661..2191941 (-) 1281 WP_014469497.1 phosphopyruvate hydratase -
  FFA29_RS11000 recA 2192062..2193111 (-) 1050 WP_004511129.1 recombinase RecA Machinery gene
  FFA29_RS11005 - 2193212..2193406 (-) 195 WP_004511130.1 hypothetical protein -
  FFA29_RS11010 pseB 2193531..2194523 (+) 993 WP_004511131.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) -
  FFA29_RS11015 pseC 2194520..2195650 (+) 1131 WP_004511132.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase -
  FFA29_RS11020 pseF 2195643..2196341 (+) 699 WP_004511133.1 pseudaminic acid cytidylyltransferase -
  FFA29_RS11025 pseI 2196338..2197363 (+) 1026 WP_004511134.1 pseudaminic acid synthase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37512.82 Da        Isoelectric Point: 4.6860

>NTDB_id=364744 FFA29_RS11000 WP_004511129.1 2192062..2193111(-) (recA) [Aliarcobacter butzleri JV22]
MDENQKKSLELAIKQIDKAFGKGTLIRLGDKEVIPVETISTGSLGLDLALGVGGLPRGRVIEIYGPESSGKTTLTLHAIA
EAQKAGGVCAFIDAEHALDVKYAKDIGVDTDNLLVSQPDFGEQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKVTGLLSKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGN
RVKVKVVKNKVAAPFKQAEFDIMFGEGISKTGELVDYGVKLDIVDKAGAWFSYGDSKIGQGRENSKVFLKDNPEVAREIE
NKILESMGVNDELITSGTDDSDDISGLDD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=364744 FFA29_RS11000 WP_004511129.1 2192062..2193111(-) (recA) [Aliarcobacter butzleri JV22]
ATGGATGAAAATCAAAAAAAATCGTTAGAATTAGCTATAAAACAAATAGATAAAGCTTTTGGTAAAGGTACTTTAATTAG
ACTTGGAGATAAAGAAGTTATTCCTGTTGAAACTATTAGTACTGGTTCTTTAGGACTTGATTTAGCTTTAGGTGTTGGAG
GACTTCCAAGAGGAAGAGTAATTGAAATTTATGGACCTGAAAGTTCAGGAAAAACAACTTTAACTTTACACGCTATTGCA
GAAGCTCAAAAAGCTGGTGGAGTTTGTGCCTTTATTGATGCTGAACATGCACTTGATGTAAAATATGCAAAAGACATTGG
TGTTGATACAGATAATTTGCTTGTTTCTCAACCAGATTTTGGAGAACAAGCTTTAGAAATACTTGAAACTGTTATTCGAA
GTGGAGCTGTTGATTTAGTAGTTGTAGATTCAGTTGCTGCACTTACTCCAAAAGTAGAAATTGATGGAGATATGGACGAC
CAACAAGTTGGAGTTCAAGCAAGACTTATGAGTAAAGCATTAAGAAAAGTAACTGGACTTTTAAGTAAAATGAATTGTAC
AGTTATTTTTATTAACCAAATAAGAATGAAAATTGGTATGACAGGATATGGAAGTCCTGAAACTACTACTGGTGGAAACG
CACTTAAATTCTACTCTTCAGTTAGACTTGATATTAGAAGAATTGCAACTTTAAAACAAGGTGAAAATTCTATTGGAAAT
AGAGTTAAAGTAAAAGTTGTAAAAAATAAAGTTGCAGCTCCATTTAAACAAGCAGAGTTTGATATTATGTTTGGAGAAGG
TATTTCAAAAACTGGTGAACTTGTTGATTATGGTGTAAAACTTGATATTGTTGATAAAGCAGGAGCTTGGTTTAGTTATG
GAGATTCAAAAATTGGACAAGGTAGAGAAAACTCTAAAGTATTCTTAAAAGATAATCCAGAAGTTGCACGTGAGATTGAA
AATAAAATCTTAGAATCTATGGGTGTAAATGACGAACTTATAACAAGTGGAACTGATGATAGTGATGATATATCTGGTTT
AGACGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G9KSN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.439

97.994

0.739
  recA Helicobacter pylori strain NCTC11637

76.048

95.702

0.728
  recA Helicobacter pylori 26695

76.048

95.702

0.728
  recA Acinetobacter baumannii D1279779

64.012

97.135

0.622
  recA Neisseria gonorrhoeae MS11

63.081

98.567

0.622
  recA Neisseria gonorrhoeae MS11

63.081

98.567

0.622
  recA Neisseria gonorrhoeae strain FA1090

63.081

98.567

0.622
  recA Acinetobacter baylyi ADP1

62.391

98.281

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.264

95.415

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.694

99.14

0.602
  recA Vibrio cholerae strain A1552

60.694

99.14

0.602
  recA Ralstonia pseudosolanacearum GMI1000

66.032

90.258

0.596
  recA Glaesserella parasuis strain SC1401

59.195

99.713

0.59
  recA Pseudomonas stutzeri DSM 10701

59.42

98.854

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

60.366

93.983

0.567
  recA Streptococcus mitis NCTC 12261

55.84

100

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

58.788

94.556

0.556
  recA Streptococcus mitis SK321

58.61

94.842

0.556
  recA Streptococcus pyogenes NZ131

58.485

94.556

0.553
  recA Streptococcus mutans UA159

57.784

95.702

0.553
  recA Streptococcus pneumoniae D39

58.006

94.842

0.55
  recA Streptococcus pneumoniae Rx1

58.006

94.842

0.55
  recA Streptococcus pneumoniae R6

58.006

94.842

0.55
  recA Streptococcus pneumoniae TIGR4

58.006

94.842

0.55
  recA Lactococcus lactis subsp. cremoris KW2

57.576

94.556

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.282

93.41

0.544

Multiple sequence alignment