Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FFA26_RS06980 Genome accession   NZ_CP040500
Coordinates   1405203..1406267 (-) Length   354 a.a.
NCBI ID   WP_003648426.1    Uniprot ID   A0AA87AMT4
Organism   Lactobacillus paragasseri JV-V03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1400203..1411267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFA26_RS06965 - 1401494..1402159 (+) 666 WP_003648429.1 YigZ family protein -
  FFA26_RS06970 - 1402179..1403321 (-) 1143 WP_003648428.1 glycosyltransferase family 4 protein -
  FFA26_RS06975 rny 1403422..1405044 (-) 1623 WP_003648427.1 ribonuclease Y -
  FFA26_RS06980 recA 1405203..1406267 (-) 1065 WP_003648426.1 recombinase RecA Machinery gene
  FFA26_RS06985 pgsA 1406427..1406990 (-) 564 WP_003648425.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FFA26_RS06990 - 1406990..1407994 (-) 1005 WP_003648424.1 RodZ family helix-turn-helix domain-containing protein -
  FFA26_RS06995 - 1408053..1408781 (-) 729 WP_003648423.1 elongation factor P 5-aminopentanone reductase -
  FFA26_RS07000 - 1408782..1410017 (-) 1236 WP_003648422.1 pitrilysin family protein -
  FFA26_RS07005 - 1410014..1411228 (-) 1215 WP_003648421.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38108.44 Da        Isoelectric Point: 7.3149

>NTDB_id=364711 FFA26_RS06980 WP_003648426.1 1405203..1406267(-) (recA) [Lactobacillus paragasseri JV-V03]
MAKDDKKKALDIALKKIEKDFGKGAVMRMGEKVDTQISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMG
DSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGN
RVKLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGRENAKQYLEEHPDVYDEVK
EKVRKAYGIDSKAIEERENPEKNKAGEGSSSGKR

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=364711 FFA26_RS06980 WP_003648426.1 1405203..1406267(-) (recA) [Lactobacillus paragasseri JV-V03]
TTGGCTAAAGATGATAAAAAGAAGGCCTTAGACATTGCCTTAAAGAAGATTGAAAAAGACTTTGGAAAAGGCGCAGTTAT
GCGTATGGGTGAAAAAGTAGACACTCAAATTTCCACTATTCCTTCCGGTTCACTAGCTTTAGATGCTGCTCTTGGAGTTG
GTGGTTATCCACGTGGACGAATTATTGAAGTATATGGACCAGAAAGTTCTGGTAAAACTACAGTAGCACTTCATGCTGTT
GCAGAAGTTCAAAAGCGTGGCGGAACGGCTGCATACATTGATGCTGAAAATGCTATGGATCCGGCTTATGCCGAGGCATT
AGGTGTAGATATTGATTCATTAATTTTATCTCAACCAAATACTGGTGAAGAAGGATTACAAATTGCAGATACTTTGATTG
CCAGTGGTGCAATTGATATTTTGGTTGTGGATTCAGTTGCTGCATTAGTACCACGAGCTGAAATTGATGGTGATATGGGA
GACTCTCACGTTGGTTTACAGGCGAGATTAATGAGTCAGGCCTTGCGGAAACTTTCTGGAAATATTTCTAAGACGAAGAC
AATCGCCGTTTTCATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGAAATCCAGAAACTACTCCTGGTGGTCGCG
CTTTAAAGTTCTACTCTACTATTCGATTAGAAGTTCGTCGCGCAGAACAGATCAAGCAAGGATCTGATGTAATTGGTAAC
CGTGTTAAGCTAAAGGTTGTTAAGAACAAGGTTGCTCCACCATTTAAAGTGGCAGAAGTTGATATCATGTACGGTAAAGG
AATTTCTCAAACTGGTGAATTAATTGATATGGCTGCTGACAAGGATATCATTAAGAAGGCTGGTTCATGGTATTCATACG
GTGATGATCGAATTGGTCAGGGACGTGAGAATGCTAAGCAATACCTTGAAGAACATCCAGATGTGTATGATGAAGTAAAA
GAAAAAGTGCGTAAAGCATATGGAATTGATTCTAAAGCTATTGAAGAGCGTGAAAACCCCGAAAAAAATAAAGCAGGAGA
AGGAAGCAGCAGCGGTAAAAGATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.067

92.938

0.763
  recA Bacillus subtilis subsp. subtilis str. 168

72.727

93.22

0.678
  recA Streptococcus mutans UA159

67.241

98.305

0.661
  recA Streptococcus pyogenes NZ131

70.517

92.938

0.655
  recA Streptococcus pneumoniae R6

67.638

96.893

0.655
  recA Streptococcus pneumoniae Rx1

67.638

96.893

0.655
  recA Streptococcus pneumoniae D39

67.638

96.893

0.655
  recA Streptococcus pneumoniae TIGR4

67.638

96.893

0.655
  recA Streptococcus mitis NCTC 12261

67.544

96.61

0.653
  recA Streptococcus mitis SK321

68.693

92.938

0.638
  recA Lactococcus lactis subsp. cremoris KW2

67.477

92.938

0.627
  recA Neisseria gonorrhoeae strain FA1090

61.562

94.068

0.579
  recA Neisseria gonorrhoeae MS11

61.562

94.068

0.579
  recA Neisseria gonorrhoeae MS11

61.562

94.068

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.5

92.655

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

91.243

0.548
  recA Acinetobacter baumannii D1279779

56.725

96.61

0.548
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.537

92.655

0.542
  recA Helicobacter pylori 26695

56.805

95.48

0.542
  recA Helicobacter pylori strain NCTC11637

56.805

95.48

0.542
  recA Acinetobacter baylyi ADP1

59.006

90.96

0.537
  recA Pseudomonas stutzeri DSM 10701

57.321

90.678

0.52
  recA Glaesserella parasuis strain SC1401

55.287

93.503

0.517
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.522

90.96

0.514
  recA Vibrio cholerae strain A1552

56.522

90.96

0.514
  recA Ralstonia pseudosolanacearum GMI1000

57.827

88.418

0.511

Multiple sequence alignment