Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FFA43_RS00980 Genome accession   NZ_CP040464
Coordinates   188656..189693 (-) Length   345 a.a.
NCBI ID   WP_034962564.1    Uniprot ID   A0A855NCT0
Organism   Campylobacter hyointestinalis subsp. hyointestinalis strain S12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 183656..194693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFA43_RS00955 (FFA43_00955) - 184908..185450 (+) 543 WP_059430431.1 NTP transferase domain-containing protein -
  FFA43_RS00960 (FFA43_00960) - 185447..186394 (+) 948 WP_059430432.1 phospholipase A -
  FFA43_RS00965 (FFA43_00965) - 186409..187113 (-) 705 WP_059430433.1 AMIN domain-containing protein -
  FFA43_RS00970 (FFA43_00970) - 187125..187406 (-) 282 WP_034962566.1 hypothetical protein -
  FFA43_RS00975 (FFA43_00975) eno 187403..188656 (-) 1254 WP_138297583.1 phosphopyruvate hydratase -
  FFA43_RS00980 (FFA43_00980) recA 188656..189693 (-) 1038 WP_034962564.1 recombinase RecA Machinery gene
  FFA43_RS00985 (FFA43_00985) - 189791..190660 (+) 870 WP_059430435.1 menaquinone biosynthesis family protein -
  FFA43_RS00990 (FFA43_00990) fliQ 190657..190926 (+) 270 WP_104064701.1 flagellar biosynthesis protein FliQ -
  FFA43_RS00995 (FFA43_00995) - 190923..191684 (+) 762 WP_059430436.1 UDP-N-acetylmuramate dehydrogenase -
  FFA43_RS01005 (FFA43_01005) - 192126..192446 (+) 321 WP_059425756.1 hypothetical protein -
  FFA43_RS01010 (FFA43_01010) - 192449..192778 (+) 330 WP_034962559.1 hypothetical protein -
  FFA43_RS01015 (FFA43_01015) - 192845..193588 (+) 744 WP_059430437.1 phosphatidate cytidylyltransferase -
  FFA43_RS01020 (FFA43_01020) - 193585..194673 (+) 1089 WP_059429636.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37240.58 Da        Isoelectric Point: 4.8222

>NTDB_id=364677 FFA43_RS00980 WP_034962564.1 188656..189693(-) (recA) [Campylobacter hyointestinalis subsp. hyointestinalis strain S12]
MDENKKKSLDLALKQIDKAFGKGTILRLGDKEFEPIDSISTGSIGLDIALGIGGIPKGRIIEIYGPESSGKTTLTLHLIA
ECQKAGGVCAFVDAEHALDVKYAGNLGVDTENLYISQPDFGEQALDIVETLARSGAVDLIVIDSVAALTPKSEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMGTTVVFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKIATLKQSDEPIGN
RVKVKVVKNKVAPPFKQAEFDIMFGEGISKEGEIIDYGVKLDIIDKSGAWFSYDNSKLGQGRENSKAFLKENKAVAEAII
EKIRANMDDGVMSSTDIDEEDLGEE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=364677 FFA43_RS00980 WP_034962564.1 188656..189693(-) (recA) [Campylobacter hyointestinalis subsp. hyointestinalis strain S12]
ATGGATGAAAATAAGAAAAAAAGCTTAGATTTAGCTTTAAAGCAGATCGATAAAGCTTTTGGAAAAGGCACTATTTTGAG
ACTAGGAGATAAAGAGTTTGAGCCAATCGATAGTATCAGTACAGGCTCTATAGGACTTGATATCGCTCTTGGCATCGGCG
GCATTCCAAAAGGTAGGATTATCGAAATTTACGGACCTGAAAGCTCAGGTAAGACAACTCTTACTTTACACCTCATAGCA
GAATGTCAAAAAGCCGGCGGAGTTTGCGCGTTTGTAGATGCAGAGCACGCACTAGACGTAAAATACGCAGGAAATTTAGG
CGTTGATACTGAAAATTTATATATATCACAACCAGATTTCGGCGAACAAGCTCTTGATATCGTAGAAACTCTAGCTAGAA
GCGGCGCAGTTGATCTCATAGTCATAGATAGCGTCGCGGCGCTCACTCCAAAAAGCGAGATAGAAGGCGATATGGGAGAT
CAACACGTCGGACTTCAAGCAAGACTTATGAGTCAAGCGCTTAGAAAACTAACTGGCATAGTACATAAAATGGGGACTAC
GGTTGTATTTATCAACCAAATTCGTATGAAAATCGGTGCCATGGGATATGGTACTCCTGAGACTACGACTGGCGGAAACG
CACTCAAATTTTACGCTTCAGTTCGTCTTGACGTACGCAAAATCGCCACTTTAAAACAGAGCGACGAGCCTATCGGAAAC
CGCGTAAAAGTAAAAGTCGTAAAAAATAAAGTCGCGCCTCCATTCAAACAAGCCGAATTTGACATAATGTTTGGTGAAGG
TATAAGCAAAGAAGGTGAGATAATAGACTATGGTGTAAAACTTGATATTATCGATAAAAGCGGCGCTTGGTTTAGTTATG
ACAACAGCAAGCTAGGACAAGGAAGAGAAAACTCAAAAGCATTTTTAAAAGAAAACAAAGCAGTAGCAGAAGCAATCATA
GAAAAAATACGTGCAAACATGGACGATGGTGTTATGAGTAGCACGGATATAGATGAAGAAGATTTAGGAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855NCT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

82.659

100

0.829
  recA Helicobacter pylori 26695

77.064

94.783

0.73
  recA Helicobacter pylori strain NCTC11637

76.758

94.783

0.728
  recA Neisseria gonorrhoeae strain FA1090

65.951

94.493

0.623
  recA Neisseria gonorrhoeae MS11

65.951

94.493

0.623
  recA Neisseria gonorrhoeae MS11

65.951

94.493

0.623
  recA Glaesserella parasuis strain SC1401

62.865

99.13

0.623
  recA Acinetobacter baumannii D1279779

61.85

100

0.62
  recA Acinetobacter baylyi ADP1

61.047

99.71

0.609
  recA Pseudomonas stutzeri DSM 10701

64.22

94.783

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

65.015

93.623

0.609
  recA Ralstonia pseudosolanacearum GMI1000

63.692

94.203

0.6
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.349

96.232

0.6
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.037

93.913

0.583
  recA Vibrio cholerae strain A1552

62.037

93.913

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

56.765

98.551

0.559
  recA Streptococcus pneumoniae R6

56.012

98.841

0.554
  recA Streptococcus pneumoniae Rx1

56.012

98.841

0.554
  recA Streptococcus pneumoniae D39

56.012

98.841

0.554
  recA Streptococcus pneumoniae TIGR4

56.012

98.841

0.554
  recA Lactococcus lactis subsp. cremoris KW2

58.462

94.203

0.551
  recA Streptococcus mitis SK321

58.104

94.783

0.551
  recA Streptococcus pyogenes NZ131

58.282

94.493

0.551
  recA Streptococcus mitis NCTC 12261

57.798

94.783

0.548
  recA Streptococcus mutans UA159

57.669

94.493

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.927

95.362

0.533

Multiple sequence alignment