Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FD725_RS20135 Genome accession   NZ_CP040297
Coordinates   4660393..4661466 (-) Length   357 a.a.
NCBI ID   WP_179049784.1    Uniprot ID   -
Organism   Nostoc sp. TCL26-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4655393..4666466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD725_RS20120 (FD725_20080) - 4656827..4657522 (+) 696 WP_179049782.1 FHA domain-containing protein -
  FD725_RS20125 (FD725_20085) - 4657649..4658830 (-) 1182 WP_256871670.1 hypothetical protein -
  FD725_RS20130 (FD725_20090) - 4658928..4660010 (-) 1083 WP_179049783.1 polysaccharide pyruvyl transferase family protein -
  FD725_RS20135 (FD725_20095) recA 4660393..4661466 (-) 1074 WP_179049784.1 recombinase RecA Machinery gene
  FD725_RS20140 (FD725_20100) cobT 4661651..4662841 (-) 1191 WP_179049785.1 nicotinate mononucleotide-dependent phosphoribosyltransferase CobT -
  FD725_RS20145 (FD725_20105) - 4662962..4663744 (-) 783 WP_179049786.1 DUF2232 domain-containing protein -
  FD725_RS20150 (FD725_20110) - 4663756..4664442 (-) 687 WP_179049787.1 Crp/Fnr family transcriptional regulator -
  FD725_RS32180 - 4664531..4664713 (-) 183 WP_218653127.1 hypothetical protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38358.74 Da        Isoelectric Point: 5.0792

>NTDB_id=363034 FD725_RS20135 WP_179049784.1 4660393..4661466(-) (recA) [Nostoc sp. TCL26-01]
MAINTDTSGKQKALTMVLNQIERSFGKGAIMRLGDATRMRVETISTGALTLDLALGGGLPKGRVIEIYGPESSGKTTVAL
HAIAEVQREGGIAAFVDAEHALDPTYAGALGVDIDNLLVSQPDTGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDAHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDE
FGNRVKVKVAKNKVAPPFRVAEFDIIFGKGVSTIGCLVDLAEETGILIRKGAWYSYNGDNISQGRDNAIKYLEEKPEFSE
QIKKLVREKLDKGAVVSANSVAKAHEEEEEDMDVEEE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=363034 FD725_RS20135 WP_179049784.1 4660393..4661466(-) (recA) [Nostoc sp. TCL26-01]
ATGGCTATCAATACCGACACTTCCGGCAAGCAAAAAGCGCTGACTATGGTACTCAACCAGATTGAGCGCAGCTTCGGTAA
AGGAGCAATCATGCGCCTGGGCGATGCTACTCGGATGCGAGTAGAGACGATTTCTACCGGGGCGCTTACCTTGGATTTAG
CATTGGGTGGCGGTTTACCCAAGGGACGAGTGATTGAGATTTATGGCCCGGAAAGTTCTGGTAAAACAACAGTAGCACTC
CATGCGATCGCCGAAGTGCAAAGAGAAGGCGGTATTGCTGCTTTCGTAGACGCAGAACACGCTCTTGATCCCACCTATGC
AGGAGCTTTGGGTGTAGATATCGACAATCTGCTGGTTTCTCAACCAGATACAGGCGAATCAGCTTTGGAAATTGTTGATC
AGTTGGTGCGTTCCGCCGCAGTTGACATTGTAGTGATCGACTCAGTTGCTGCGTTGGTTCCCCGTGCGGAAATTGAAGGA
GATATGGGTGATGCTCACGTCGGTTTACAAGCGAGATTGATGAGCCAAGCTCTACGTAAAATCACTGGCAATATTGGTAA
ATCTGGTTGCACAGTCATTTTCATCAACCAACTGCGACAAAAAATTGGTGTTACCTACGGTAGCCCAGAAACCACAACTG
GTGGTAACGCACTGAAATTCTATGCTTCAGTCCGCTTAGATATTCGTCGGATTCAAACCTTGAAAAAAGGAACTGATGAA
TTTGGTAATCGAGTGAAAGTCAAAGTTGCTAAAAATAAAGTTGCACCACCTTTTAGAGTTGCAGAATTTGACATTATCTT
TGGTAAAGGAGTTTCTACTATCGGTTGTTTAGTAGACTTGGCTGAAGAAACTGGTATTCTCATCCGCAAGGGCGCTTGGT
ATAGCTACAACGGCGATAATATTTCCCAGGGACGAGATAATGCTATTAAATACTTAGAAGAAAAGCCAGAATTTTCTGAG
CAAATTAAAAAACTGGTGCGAGAAAAGCTAGACAAAGGTGCTGTGGTTTCTGCTAACTCTGTAGCTAAGGCTCATGAAGA
AGAAGAAGAAGATATGGATGTTGAAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.655

97.479

0.63
  recA Pseudomonas stutzeri DSM 10701

63.873

96.919

0.619
  recA Acinetobacter baumannii D1279779

63.401

97.199

0.616
  recA Ralstonia pseudosolanacearum GMI1000

63.746

92.717

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

62.651

92.997

0.583
  recA Glaesserella parasuis strain SC1401

59.026

97.759

0.577
  recA Neisseria gonorrhoeae strain FA1090

64.062

89.636

0.574
  recA Neisseria gonorrhoeae MS11

64.062

89.636

0.574
  recA Neisseria gonorrhoeae MS11

64.062

89.636

0.574
  recA Streptococcus pneumoniae D39

57.465

99.44

0.571
  recA Streptococcus pneumoniae TIGR4

57.465

99.44

0.571
  recA Streptococcus pneumoniae Rx1

57.465

99.44

0.571
  recA Streptococcus pneumoniae R6

57.465

99.44

0.571
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.354

90.196

0.571
  recA Vibrio cholerae strain A1552

63.354

90.196

0.571
  recA Helicobacter pylori 26695

61.145

92.997

0.569
  recA Helicobacter pylori strain NCTC11637

61.145

92.997

0.569
  recA Streptococcus mutans UA159

57.925

97.199

0.563
  recA Streptococcus mitis NCTC 12261

56.215

99.16

0.557
  recA Streptococcus pyogenes NZ131

57.184

97.479

0.557
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.639

92.997

0.555
  recA Latilactobacillus sakei subsp. sakei 23K

61.755

89.356

0.552
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.756

91.877

0.549
  recA Streptococcus mitis SK321

59.752

90.476

0.541
  recA Lactococcus lactis subsp. cremoris KW2

59.443

90.476

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.402

92.717

0.532

Multiple sequence alignment