Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   E3S73_RS04245 Genome accession   NZ_CP047799
Coordinates   829150..829923 (-) Length   257 a.a.
NCBI ID   WP_123090109.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_322     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 824150..834923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S73_RS04210 (E3S73_04210) - 824403..825173 (-) 771 WP_000473705.1 isoprenyl transferase -
  E3S73_RS04215 (E3S73_04215) frr 825546..826100 (-) 555 WP_001280006.1 ribosome recycling factor -
  E3S73_RS04220 (E3S73_04220) pyrH 826119..826841 (-) 723 WP_000057330.1 UMP kinase -
  E3S73_RS04225 (E3S73_04225) tsf 826978..827859 (-) 882 WP_000201387.1 translation elongation factor Ts -
  E3S73_RS04230 (E3S73_04230) - 827894..828007 (-) 114 WP_001791405.1 hypothetical protein -
  E3S73_RS04235 (E3S73_04235) rpsB 828041..828808 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  E3S73_RS04240 (E3S73_04240) - 829007..829099 (-) 93 WP_031788481.1 hypothetical protein -
  E3S73_RS04245 (E3S73_04245) codY 829150..829923 (-) 774 WP_123090109.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  E3S73_RS04250 (E3S73_04250) hslU 829948..831351 (-) 1404 WP_000379051.1 ATP-dependent protease ATPase subunit HslU -
  E3S73_RS04255 (E3S73_04255) hslV 831417..831962 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  E3S73_RS04260 (E3S73_04260) xerC 831959..832855 (-) 897 WP_001015609.1 tyrosine recombinase XerC -
  E3S73_RS04265 (E3S73_04265) trmFO 833273..834580 (-) 1308 WP_000195249.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28683.07 Da        Isoelectric Point: 6.3668

>NTDB_id=363005 E3S73_RS04245 WP_123090109.1 829150..829923(-) (codY) [Staphylococcus aureus strain UP_322]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDGLEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=363005 E3S73_RS04245 WP_123090109.1 829150..829923(-) (codY) [Staphylococcus aureus strain UP_322]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGCGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACACGATG
ACTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACAGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGGATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment