Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FD723_RS29430 Genome accession   NZ_CP040272
Coordinates   7110614..7111693 (+) Length   359 a.a.
NCBI ID   WP_179068506.1    Uniprot ID   -
Organism   Nostoc sp. C052     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7105614..7116693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD723_RS29410 (FD723_29290) - 7105924..7108182 (-) 2259 WP_179068504.1 ATP-binding protein -
  FD723_RS29415 (FD723_29295) xseB 7108458..7108685 (-) 228 WP_179068505.1 exodeoxyribonuclease VII small subunit -
  FD723_RS29420 (FD723_29300) xseA 7108678..7109946 (-) 1269 WP_179069321.1 exodeoxyribonuclease VII large subunit -
  FD723_RS29425 (FD723_29305) - 7110008..7110196 (-) 189 WP_256874962.1 type II toxin-antitoxin system RelE/ParE family toxin -
  FD723_RS29430 (FD723_29310) recA 7110614..7111693 (+) 1080 WP_179068506.1 recombinase RecA Machinery gene
  FD723_RS29435 (FD723_29315) - 7111883..7112089 (+) 207 WP_179068507.1 hypothetical protein -
  FD723_RS29440 (FD723_29320) - 7112135..7112458 (+) 324 WP_099103723.1 thioredoxin family protein -
  FD723_RS29445 (FD723_29325) - 7112445..7112678 (-) 234 WP_179068508.1 hypothetical protein -
  FD723_RS29450 - 7112965..7113123 (+) 159 WP_179068509.1 hypothetical protein -
  FD723_RS29455 (FD723_29330) - 7113764..7115983 (-) 2220 WP_179068510.1 tetratricopeptide repeat protein -
  FD723_RS29460 (FD723_29335) - 7116116..7116679 (-) 564 WP_179068511.1 type IV pilin-like G/H family protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38516.87 Da        Isoelectric Point: 4.9023

>NTDB_id=363005 FD723_RS29430 WP_179068506.1 7110614..7111693(+) (recA) [Nostoc sp. C052]
MAINTDTSGKQKALTMVLNQIERSFGKGAIMRLGDATRMRVETISSGALTLDLALGGGLPKGRVIEIYGPESSGKTTVAL
HALAEVQRNGGIAAFVDAEHALDPTYAAALGVDIDNLLISQPDTGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDAHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDE
YGNRVKVKVAKNKVAPPFRIAEFDIIFGKGISTLGCVVDLAEETGIIIRKGAWYSYNGDNISQGRDNAIKYLEEKPEFAE
EIKKLVREKLDKGAVVSANSVAKASEEDEEEDVDLEPEE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=363005 FD723_RS29430 WP_179068506.1 7110614..7111693(+) (recA) [Nostoc sp. C052]
ATGGCTATCAACACCGATACTTCTGGCAAGCAAAAAGCACTGACTATGGTGCTTAACCAGATTGAGCGCAGCTTTGGTAA
AGGGGCAATCATGCGCCTGGGCGATGCTACCCGGATGCGGGTGGAAACAATTTCTAGTGGAGCGCTTACCCTAGATTTAG
CATTGGGTGGTGGTTTACCCAAAGGGCGGGTAATTGAAATTTATGGGCCAGAAAGTTCTGGTAAAACTACAGTAGCGCTA
CACGCGCTTGCCGAAGTGCAAAGAAATGGCGGTATTGCTGCCTTCGTTGATGCTGAACACGCCCTAGACCCTACTTATGC
TGCGGCATTGGGTGTAGATATTGACAATTTGCTGATTTCTCAACCTGACACTGGCGAATCAGCTTTGGAAATTGTCGATC
AGCTCGTTCGTTCTGCTGCGGTTGATATTGTAGTTATAGACTCAGTAGCAGCATTGGTTCCCCGTGCTGAAATTGAAGGC
GATATGGGTGATGCCCACGTTGGTCTGCAAGCGCGGTTAATGAGCCAAGCCCTACGTAAGATTACTGGCAACATTGGTAA
ATCTGGTTGTACAGTAATTTTCATCAACCAGTTGCGGCAAAAAATCGGTGTTACCTACGGTAGCCCAGAAACTACAACTG
GTGGTAACGCATTGAAATTTTACGCTTCCGTGCGTTTGGATATTCGTCGGATTCAAACCTTGAAAAAAGGTACAGATGAA
TATGGTAACCGCGTTAAGGTGAAAGTCGCCAAAAATAAAGTAGCGCCGCCTTTTAGAATAGCGGAATTTGACATTATTTT
TGGTAAAGGTATTTCTACCTTGGGTTGTGTTGTTGACTTAGCAGAAGAAACTGGCATTATTATCCGCAAAGGTGCTTGGT
ATAGTTACAACGGCGATAATATCTCCCAAGGACGAGACAACGCTATTAAGTATCTAGAAGAAAAGCCTGAATTTGCTGAA
GAAATTAAGAAACTGGTGCGTGAAAAGCTAGATAAAGGCGCTGTTGTTTCTGCTAACTCTGTAGCTAAAGCCAGCGAAGA
AGATGAAGAGGAAGATGTCGATTTAGAGCCAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

63.506

96.936

0.616
  recA Acinetobacter baumannii D1279779

63.218

96.936

0.613
  recA Pseudomonas stutzeri DSM 10701

64.118

94.708

0.607
  recA Ralstonia pseudosolanacearum GMI1000

63.746

92.201

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

62.952

92.479

0.582
  recA Streptococcus pneumoniae TIGR4

58.31

98.886

0.577
  recA Streptococcus pneumoniae Rx1

58.31

98.886

0.577
  recA Streptococcus pneumoniae D39

58.31

98.886

0.577
  recA Streptococcus pneumoniae R6

58.31

98.886

0.577
  recA Neisseria gonorrhoeae strain FA1090

64.375

89.136

0.574
  recA Neisseria gonorrhoeae MS11

64.375

89.136

0.574
  recA Neisseria gonorrhoeae MS11

64.375

89.136

0.574
  recA Latilactobacillus sakei subsp. sakei 23K

58.028

98.886

0.574
  recA Glaesserella parasuis strain SC1401

58.908

96.936

0.571
  recA Streptococcus mutans UA159

58.739

97.214

0.571
  recA Streptococcus mitis NCTC 12261

57.465

98.886

0.568
  recA Helicobacter pylori 26695

61.446

92.479

0.568
  recA Helicobacter pylori strain NCTC11637

61.446

92.479

0.568
  recA Streptococcus pyogenes NZ131

57.79

98.329

0.568
  recA Streptococcus mitis SK321

57.022

99.164

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.261

96.1

0.56
  recA Vibrio cholerae strain A1552

62.112

89.694

0.557
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

89.694

0.557
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

91.365

0.549
  recA Lactococcus lactis subsp. cremoris KW2

59.752

89.972

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.402

92.201

0.529

Multiple sequence alignment