Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FEF05_RS09365 Genome accession   NZ_CP040243
Coordinates   1861005..1862123 (-) Length   372 a.a.
NCBI ID   WP_187765032.1    Uniprot ID   -
Organism   Glaesserella parasuis strain HPS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1856005..1867123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEF05_RS09315 (FEF05_09320) ubiK 1857340..1857600 (-) 261 WP_010786182.1 ubiquinone biosynthesis accessory factor UbiK -
  FEF05_RS09340 (FEF05_09345) aroE 1858285..1859103 (-) 819 WP_010786181.1 shikimate dehydrogenase -
  FEF05_RS09345 (FEF05_09350) - 1859107..1859661 (-) 555 WP_035523685.1 Sua5/YciO/YrdC/YwlC family protein -
  FEF05_RS09350 (FEF05_09355) - 1859661..1860191 (-) 531 WP_035523682.1 type I DNA topoisomerase -
  FEF05_RS09355 (FEF05_09360) yqfB 1860199..1860504 (-) 306 WP_149351125.1 N(4)-acetylcytidine aminohydrolase -
  FEF05_RS09360 (FEF05_09365) recX 1860497..1860952 (-) 456 WP_149351126.1 recombination regulator RecX -
  FEF05_RS09365 (FEF05_09370) recA 1861005..1862123 (-) 1119 WP_187765032.1 recombinase RecA Machinery gene
  FEF05_RS09370 (FEF05_09375) - 1862256..1862861 (-) 606 WP_035489995.1 aminotransferase class IV family protein -
  FEF05_RS09375 (FEF05_09380) - 1862839..1863810 (-) 972 WP_016527506.1 aminodeoxychorismate synthase component I -
  FEF05_RS09380 (FEF05_09385) - 1863843..1864037 (+) 195 Protein_1824 cation transporter -
  FEF05_RS09385 (FEF05_09390) tehB 1864262..1865125 (+) 864 WP_015939662.1 SAM-dependent methyltransferase TehB -
  FEF05_RS09390 (FEF05_09395) dusA 1865401..1866372 (+) 972 WP_035489999.1 tRNA dihydrouridine(20/20a) synthase DusA -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 40245.84 Da        Isoelectric Point: 4.7535

>NTDB_id=362845 FEF05_RS09365 WP_187765032.1 1861005..1862123(-) (recA) [Glaesserella parasuis strain HPS-1]
MAENKKSSKNNTVIKQVPPEQKQQALDAALAQIEKQFGKGSIMKLGQTEQLDIESVSTGSLGLDLALGIGGLPMGRIVEI
YGPESSGKTTLTLSLIAQAQKGNKTCAFIDAEHALDPVYARNLGVNTDDLLISQPDNGEQALEICDALVRSGAVDVIIVD
SVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKNTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD
IRRCGVVKDGDEIIGSETKVKVVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIKKSGAWFSYDGTKIGQGKNN
AVKWLKENPEIADKLEQEIRNTLASNPNSLLKATASDSNDESDVEEFSEEEL

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=362845 FEF05_RS09365 WP_187765032.1 1861005..1862123(-) (recA) [Glaesserella parasuis strain HPS-1]
ATGGCTGAGAATAAAAAATCTTCAAAAAACAATACCGTCATTAAACAAGTTCCACCAGAACAGAAACAACAAGCCTTAGA
TGCGGCACTAGCTCAAATTGAAAAACAATTTGGTAAAGGCTCTATTATGAAATTAGGGCAGACTGAGCAATTAGATATTG
AGTCTGTTTCAACAGGCTCACTAGGGCTAGACCTTGCTTTAGGTATTGGTGGCTTGCCAATGGGGCGTATTGTTGAAATC
TATGGGCCAGAATCGTCAGGTAAGACAACATTAACACTTTCTTTGATTGCTCAAGCTCAAAAAGGCAATAAAACCTGTGC
TTTTATTGACGCTGAACATGCTTTAGATCCTGTCTATGCTCGCAATTTAGGGGTAAATACAGATGATTTATTGATTTCTC
AGCCAGATAACGGTGAACAAGCTCTTGAAATCTGTGATGCGTTAGTTCGTTCAGGGGCAGTTGATGTCATTATTGTGGAC
TCTGTCGCTGCACTCACGCCAAAAGCTGAAATTGAAGGGGATATGGGTGACTCGCATATGGGCTTACAAGCACGTTTAAT
GTCACAAGCGTTGCGTAAACTTACTGCGAACATCAAAAATACCAACTGTTTAGTTGTATTTATCAACCAAATCCGTATGA
AAATTGGTGTAATGTTTGGTAATCCAGAAACCACCACAGGCGGTAATGCACTGAAATTCTATGCCTCTGTTCGTTTAGAT
ATTCGTCGTTGTGGTGTAGTCAAAGATGGCGATGAAATTATTGGTAGTGAAACAAAAGTAAAAGTAGTAAAAAACAAAGT
TGCACCGCCATTCCGTGAAGTACAATTTGATATTATGTACGGCGAAGGGATTTCTCGTATGAATGAGCTACTGATTTTAG
CTGAAGCAAATGGCTTTATTAAGAAATCAGGTGCTTGGTTCTCTTACGACGGAACGAAAATTGGACAAGGTAAAAATAAT
GCAGTGAAATGGTTAAAAGAGAACCCTGAAATTGCAGATAAACTTGAACAAGAGATCCGAAATACATTGGCGTCAAACCC
AAATAGCCTATTAAAAGCGACGGCAAGCGACAGCAACGATGAAAGCGATGTCGAAGAGTTTAGCGAAGAAGAACTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

98.387

100

0.984
  recA Vibrio cholerae strain A1552

69.516

94.355

0.656
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.516

94.355

0.656
  recA Pseudomonas stutzeri DSM 10701

71.345

91.935

0.656
  recA Acinetobacter baylyi ADP1

69.298

91.935

0.637
  recA Acinetobacter baumannii D1279779

71.605

87.097

0.624
  recA Neisseria gonorrhoeae MS11

67.257

91.129

0.613
  recA Neisseria gonorrhoeae MS11

67.257

91.129

0.613
  recA Neisseria gonorrhoeae strain FA1090

67.257

91.129

0.613
  recA Ralstonia pseudosolanacearum GMI1000

70.476

84.677

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.759

89.247

0.578
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.644

87.634

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.777

86.828

0.554
  recA Streptococcus mitis NCTC 12261

60.588

91.398

0.554
  recA Streptococcus pneumoniae R6

60.058

92.204

0.554
  recA Streptococcus pneumoniae Rx1

60.058

92.204

0.554
  recA Streptococcus pneumoniae D39

60.058

92.204

0.554
  recA Streptococcus pneumoniae TIGR4

60.058

92.204

0.554
  recA Bacillus subtilis subsp. subtilis str. 168

62.121

88.71

0.551
  recA Streptococcus mutans UA159

60

91.398

0.548
  recA Streptococcus mitis SK321

60

91.398

0.548
  recA Streptococcus pyogenes NZ131

56.198

97.581

0.548
  recA Helicobacter pylori 26695

61.28

88.172

0.54
  recA Helicobacter pylori strain NCTC11637

60.976

88.172

0.538
  recA Lactococcus lactis subsp. cremoris KW2

56.977

92.473

0.527
  recA Latilactobacillus sakei subsp. sakei 23K

60.125

86.29

0.519

Multiple sequence alignment