Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FDQ49_RS17220 Genome accession   NZ_CP040105
Coordinates   3653076..3654128 (-) Length   350 a.a.
NCBI ID   WP_002049645.1    Uniprot ID   A0A0A8JAC0
Organism   Acinetobacter nosocomialis M2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3648076..3659128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ49_RS17185 (FDQ49_17185) - 3648317..3648820 (+) 504 WP_016804937.1 OmpH family outer membrane protein -
  FDQ49_RS17190 (FDQ49_17190) lpxD 3648825..3649895 (+) 1071 WP_022575605.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  FDQ49_RS17195 (FDQ49_17195) fabZ 3649902..3650387 (+) 486 WP_002049600.1 3-hydroxyacyl-ACP dehydratase FabZ -
  FDQ49_RS17200 (FDQ49_17200) lpxA 3650384..3651172 (+) 789 WP_002049604.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  FDQ49_RS17205 (FDQ49_17205) - 3651227..3652111 (-) 885 WP_022575606.1 YbgF trimerization domain-containing protein -
  FDQ49_RS17215 (FDQ49_17215) - 3652539..3653021 (-) 483 WP_004886889.1 regulatory protein RecX -
  FDQ49_RS17220 (FDQ49_17220) recA 3653076..3654128 (-) 1053 WP_002049645.1 recombinase RecA Machinery gene
  FDQ49_RS17225 (FDQ49_17225) - 3654274..3654714 (-) 441 WP_002049587.1 RNA-binding S4 domain-containing protein -
  FDQ49_RS17230 (FDQ49_17230) - 3654698..3655384 (-) 687 WP_022575607.1 HAD-IA family hydrolase -
  FDQ49_RS17235 (FDQ49_17235) - 3655745..3655981 (+) 237 WP_004886896.1 hypothetical protein -
  FDQ49_RS17240 (FDQ49_17240) - 3656096..3656389 (+) 294 WP_004708422.1 hypothetical protein -
  FDQ49_RS17245 (FDQ49_17245) - 3656441..3656977 (-) 537 WP_022575608.1 GNAT family N-acetyltransferase -
  FDQ49_RS17250 (FDQ49_17250) gigD 3657021..3657470 (-) 450 WP_022575609.1 Lrp/AsnC family transcriptional regulator GigD -
  FDQ49_RS17255 (FDQ49_17255) kynU 3657617..3658867 (+) 1251 WP_022575610.1 kynureninase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38070.43 Da        Isoelectric Point: 4.8604

>NTDB_id=362252 FDQ49_RS17220 WP_002049645.1 3653076..3654128(-) (recA) [Acinetobacter nosocomialis M2]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFREAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRYFEENKHIAEEIER
NIREQLLTTGTNGAVQIEDDEEEPDLLLES

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=362252 FDQ49_RS17220 WP_002049645.1 3653076..3654128(-) (recA) [Acinetobacter nosocomialis M2]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCTTTGAGCCAAATTGAGAAACAATTTGGTAAAAATACGGTTATGCG
TCTCGGCGACAACACTGTTCAAGCAGTTGAAGCCGTATCTACAGGTTCTTTAACTTTAGACATCGCATTGGGGATTGGTG
GTTTACCAAAAGGCCGTATTATTGAAATTTATGGTCCTGAATCTTCTGGTAAAACCACAATGACATTACAAGCAATTGCT
CAATGTCAAAAGTCTGGTGGTACATGTGCCTTCATCGATGCAGAGCATGCCCTAGATCCTCAATATGCACGTAAGCTTGG
TGTAGATATTGATAACCTACTCGTTTCACAACCTGATAATGGTGAGCAAGCGCTTGAAATCGCTGATATGCTTGTTCGCT
CAGGTGCAATTGATTTAATCGTTGTGGACTCAGTAGCTGCTCTTACACCTAAAGCAGAGATTGAAGGCGAAATGGGTGAT
TCTCATATGGGTCTACAAGCACGTCTTATGAGCCAAGCACTTCGTAAAATTACTGGTAACGCTAAACGTTCAAACTGTAT
GGTTATCTTTATTAACCAAATCCGTATGAAGATTGGTGTTATGTTTGGTAGCCCAGAAACCACGACTGGTGGTAACGCTC
TTAAGTTCTATGCTTCAGTTCGTCTAGATATTCGTCGTATTGGTCAGGTAAAAGAAGGCGATGAAATTGTTGGTTCAGAA
ACTAAAGTTAAAGTCGTTAAGAATAAAATGGCTCCTCCTTTTAGAGAAGCTATTTTCCAAATTCTATACGGTAAAGGTAC
TAACCAATTAGGTGAACTTGTAGATTTGGCAGTACAGCAAGATATCGTTCAGAAAGCTGGTGCATGGTATTCATATCAAG
GCAATAAAATTGGCCAAGGTAAGAATAATGTGATCCGCTATTTTGAAGAAAATAAACATATTGCTGAAGAGATTGAACGC
AATATCCGTGAGCAATTGTTGACTACAGGTACAAATGGCGCAGTACAAATTGAAGATGATGAAGAAGAACCAGATCTTTT
ATTAGAATCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8JAC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

98.857

100

0.989
  recA Acinetobacter baylyi ADP1

92.507

99.143

0.917
  recA Pseudomonas stutzeri DSM 10701

73.487

99.143

0.729
  recA Vibrio cholerae strain A1552

73.394

93.429

0.686
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.394

93.429

0.686
  recA Glaesserella parasuis strain SC1401

71.914

92.571

0.666
  recA Ralstonia pseudosolanacearum GMI1000

70.732

93.714

0.663
  recA Neisseria gonorrhoeae MS11

65.812

100

0.66
  recA Neisseria gonorrhoeae MS11

65.812

100

0.66
  recA Neisseria gonorrhoeae strain FA1090

65.812

100

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.899

98.571

0.62
  recA Helicobacter pylori strain NCTC11637

63.158

97.714

0.617
  recA Helicobacter pylori 26695

62.865

97.714

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

94.571

0.6
  recA Streptococcus pneumoniae D39

59.827

98.857

0.591
  recA Streptococcus pneumoniae Rx1

59.827

98.857

0.591
  recA Streptococcus pneumoniae R6

59.827

98.857

0.591
  recA Streptococcus pneumoniae TIGR4

59.827

98.857

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.577

93.143

0.583
  recA Bacillus subtilis subsp. subtilis str. 168

63.043

92

0.58
  recA Streptococcus mitis NCTC 12261

61.656

93.143

0.574
  recA Streptococcus mutans UA159

61.28

93.714

0.574
  recA Streptococcus mitis SK321

61.35

93.143

0.571
  recA Streptococcus pyogenes NZ131

61.538

92.857

0.571
  recA Lactococcus lactis subsp. cremoris KW2

58.514

92.286

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

58.255

91.714

0.534

Multiple sequence alignment