Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FDN13_RS00495 Genome accession   NZ_CP040093
Coordinates   97230..98261 (+) Length   343 a.a.
NCBI ID   WP_138978378.1    Uniprot ID   A0A5B7TC12
Organism   Caloramator sp. E03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 92230..103261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDN13_RS00480 (FDN13_00480) - 92712..94958 (+) 2247 WP_138978375.1 DNA translocase FtsK -
  FDN13_RS00485 (FDN13_00485) rimO 95217..96560 (+) 1344 WP_138978376.1 30S ribosomal protein S12 methylthiotransferase RimO -
  FDN13_RS00490 (FDN13_00490) pgsA 96544..97062 (+) 519 WP_138978377.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FDN13_RS00495 (FDN13_00495) recA 97230..98261 (+) 1032 WP_138978378.1 recombinase RecA Machinery gene
  FDN13_RS00500 (FDN13_00500) - 98331..98960 (+) 630 WP_138978379.1 regulatory protein RecX -
  FDN13_RS00505 (FDN13_00505) - 98957..99949 (+) 993 WP_138978380.1 metallophosphoesterase -
  FDN13_RS00510 (FDN13_00510) - 99946..101385 (+) 1440 WP_138978381.1 AAA family ATPase -
  FDN13_RS00515 (FDN13_00515) - 101398..101634 (+) 237 WP_138978382.1 hypothetical protein -
  FDN13_RS00520 (FDN13_00520) - 101647..102306 (+) 660 WP_138978383.1 ATPase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37087.76 Da        Isoelectric Point: 6.7401

>NTDB_id=362011 FDN13_RS00495 WP_138978378.1 97230..98261(+) (recA) [Caloramator sp. E03]
MLSEKQKALELAISQIEKQFGKGSIMKLGEDAKLNVECISTGSLDLDIALGIGGVPRGRIVEIYGPESSGKTTVALHIIA
EAQKNGGAAAFIDAEHALDPVYAKKLGVDIENLVLSQPDTGEQALEIAEALVRSGAIDVIVIDSVAALVPKAEIEGEMGD
AHVGLQARLMSQALRKLAGAINKSKCVAIFINQLREKVGIMFGSPETTPGGRALKFYASIRLDVRKVDSIKQGEDILGSR
TRVKVVKNKVAPPFKQAEFDIMYGEGISKEGNILDVAVNNDIVQKSGAWFSYNDTKLGQGRENAKNFLRENPSVAIEIEN
KIRDKYKLPLIPVKVEENKIKND

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=362011 FDN13_RS00495 WP_138978378.1 97230..98261(+) (recA) [Caloramator sp. E03]
ATGTTAAGTGAAAAGCAAAAAGCATTAGAATTAGCTATAAGCCAAATTGAAAAACAATTTGGTAAGGGTTCAATTATGAA
ACTTGGAGAAGATGCTAAGTTAAATGTGGAATGCATTTCCACTGGATCTTTAGACCTTGATATTGCTCTTGGAATTGGAG
GGGTACCAAGAGGTAGAATAGTAGAGATATATGGTCCCGAATCTTCAGGTAAAACCACAGTTGCACTTCATATAATAGCA
GAAGCACAAAAAAATGGAGGTGCAGCAGCTTTTATTGATGCAGAACATGCTCTTGATCCTGTATATGCTAAAAAACTTGG
GGTTGATATTGAAAATCTTGTTCTATCTCAGCCTGATACAGGTGAGCAAGCTCTTGAAATAGCTGAGGCTCTTGTAAGAT
CAGGTGCAATAGATGTTATAGTAATAGATTCCGTTGCAGCTCTCGTTCCTAAAGCAGAAATCGAAGGAGAAATGGGAGAT
GCTCATGTAGGTCTTCAGGCAAGGCTTATGTCACAGGCTTTGAGAAAGCTTGCTGGTGCTATAAACAAATCAAAATGTGT
TGCAATATTTATAAATCAGCTTAGAGAAAAAGTTGGAATTATGTTTGGAAGCCCAGAAACAACTCCAGGTGGTAGAGCAT
TGAAATTCTACGCATCAATAAGACTTGATGTAAGAAAAGTTGATTCAATAAAGCAAGGTGAAGATATATTGGGTAGTAGA
ACAAGGGTTAAGGTTGTTAAAAACAAAGTTGCTCCTCCTTTTAAGCAAGCTGAGTTTGATATAATGTATGGTGAAGGAAT
ATCAAAAGAAGGTAACATATTAGATGTAGCAGTAAATAATGATATAGTACAAAAAAGTGGTGCATGGTTTTCTTATAACG
ACACAAAACTCGGACAAGGAAGAGAAAATGCTAAGAATTTCTTAAGAGAAAACCCTTCTGTGGCAATTGAGATTGAAAAT
AAAATAAGAGATAAATATAAATTACCATTGATCCCCGTTAAGGTTGAAGAAAATAAAATTAAAAATGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B7TC12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

72.477

95.335

0.691
  recA Lactococcus lactis subsp. cremoris KW2

66.97

96.21

0.644
  recA Neisseria gonorrhoeae MS11

67.901

94.461

0.641
  recA Neisseria gonorrhoeae MS11

67.901

94.461

0.641
  recA Neisseria gonorrhoeae strain FA1090

67.901

94.461

0.641
  recA Latilactobacillus sakei subsp. sakei 23K

66.565

95.918

0.638
  recA Streptococcus pneumoniae D39

66.061

96.21

0.636
  recA Streptococcus pneumoniae Rx1

66.061

96.21

0.636
  recA Streptococcus pneumoniae R6

66.061

96.21

0.636
  recA Streptococcus pneumoniae TIGR4

66.061

96.21

0.636
  recA Streptococcus mitis SK321

65.758

96.21

0.633
  recA Helicobacter pylori 26695

67.391

93.878

0.633
  recA Streptococcus mitis NCTC 12261

65.455

96.21

0.63
  recA Helicobacter pylori strain NCTC11637

67.081

93.878

0.63
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.653

96.501

0.624
  recA Streptococcus mutans UA159

65.046

95.918

0.624
  recA Acinetobacter baumannii D1279779

65.846

94.752

0.624
  recA Acinetobacter baylyi ADP1

65.846

94.752

0.624
  recA Streptococcus pyogenes NZ131

65.443

95.335

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.538

94.752

0.621
  recA Ralstonia pseudosolanacearum GMI1000

68.608

90.087

0.618
  recA Pseudomonas stutzeri DSM 10701

64.923

94.752

0.615
  recA Glaesserella parasuis strain SC1401

65.732

93.586

0.615
  recA Vibrio cholerae strain A1552

65.123

94.461

0.615
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.123

94.461

0.615
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.3

94.169

0.577

Multiple sequence alignment