Detailed information NTG0361023

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: FCS00_RS08030
• Genome accession: NZ_CP039929
• Coordinates: 1745088..1746089 (+)
• Length: 333 a.a.
• NCBI ID: WP_059343632.1
• Uniprot ID: -
• Organism: Elizabethkingia sp. 2-6
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	1731535..1744842	1745088..1746089	flank	246

Gene organization within MGE regions

Location: 1731535..1746089

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FCS00_RS07955 (FCS00_07955)	-	1731666..1733009 (+)	1344	WP_051259717.1	site-specific integrase	-
FCS00_RS07960 (FCS00_07960)	-	1733006..1733959 (+)	954	WP_028123572.1	hypothetical protein	-
FCS00_RS07965 (FCS00_07965)	-	1734156..1734461 (+)	306	WP_028123571.1	DUF3853 family protein	-
FCS00_RS07970 (FCS00_07970)	-	1734509..1735678 (+)	1170	WP_028123570.1	VapE domain-containing protein	-
FCS00_RS07975 (FCS00_07975)	-	1735928..1736815 (+)	888	WP_028123569.1	toprim domain-containing protein	-
FCS00_RS07980 (FCS00_07980)	-	1736952..1737422 (+)	471	WP_028123568.1	hypothetical protein	-
FCS00_RS07985 (FCS00_07985)	-	1737419..1738273 (+)	855	WP_051259716.1	relaxase/mobilization nuclease domain-containing protein	-
FCS00_RS07990 (FCS00_07990)	-	1738279..1738842 (+)	564	WP_028123567.1	hypothetical protein	-
FCS00_RS07995 (FCS00_07995)	-	1739060..1739263 (+)	204	WP_028123566.1	hypothetical protein	-
FCS00_RS08000 (FCS00_08000)	-	1739317..1739610 (+)	294	WP_028123565.1	hypothetical protein	-
FCS00_RS08005 (FCS00_08005)	-	1739607..1740755 (+)	1149	WP_028123564.1	hypothetical protein	-
FCS00_RS20340	-	1740745..1742604 (+)	1860	WP_034975277.1	prenyltransferase/squalene oxidase repeat-containing protein	-
FCS00_RS08015 (FCS00_08015)	-	1742604..1743779 (+)	1176	WP_028123562.1	hypothetical protein	-
FCS00_RS08020 (FCS00_08020)	-	1743939..1744585 (+)	647	Protein_1611	ATP-binding cassette domain-containing protein	-
FCS00_RS08030 (FCS00_08030)	recA	1745088..1746089 (+)	1002	WP_059343632.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 35854.05 Da
• Isoelectric Point: 5.3284

>NTDB_id=361023 FCS00_RS08030 WP_059343632.1 1745088..1746089(+) (recA) [Elizabethkingia sp. 2-6]
MSNTDDKKKALALVLEKLDKTYGKGTVMTLGEDSVDHSIEVIPSGSLGLDLALGVGGYPKGRIIEIYGPESSGKTTLTLH
AIAEAQKQGGIAAFIDAEHAFDRNYAAKLGINLEDLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATIAKTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRKASAPIKQGDEA
VGSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKVGEILDQGVELGVIQKSGSWFSYNDTKLGQGRDAVKDVIKDNPELQE
ELEEKIKEKINAN

Nucleotide

• Length: 1002 bp

>NTDB_id=361023 FCS00_RS08030 WP_059343632.1 1745088..1746089(+) (recA) [Elizabethkingia sp. 2-6]
ATGAGCAATACAGACGATAAGAAAAAAGCGCTGGCCCTTGTGCTGGAAAAGCTTGATAAAACCTACGGAAAAGGAACCGT
AATGACTTTAGGAGAGGATTCTGTAGACCACTCTATCGAAGTTATTCCTTCAGGTTCTTTAGGACTTGACCTTGCATTAG
GTGTGGGTGGTTATCCAAAAGGAAGAATTATCGAAATCTATGGACCTGAATCTTCAGGTAAAACAACCTTAACGCTTCAC
GCAATTGCTGAAGCACAAAAACAGGGCGGAATCGCAGCATTTATTGATGCTGAGCACGCTTTCGACAGAAATTATGCAGC
TAAACTGGGAATTAACTTAGAAGATCTTATTATTTCTCAACCCGATAATGGTGAGCAGGCATTGGAAATTGCTGATAACC
TTATCCGTTCAGGAGCAATTGATATTGTAGTAATAGACTCTGTAGCAGCCCTAACGCCAAAAGCAGAAATTGAAGGGGAA
ATGGGAGATTCTAAAATGGGGCTTCACGCTAGATTGATGTCTCAGGCATTAAGAAAGCTTACAGCTACTATTGCTAAAAC
AAAATGTACCGTAATCTTCATTAACCAGTTAAGAGAAAAAATCGGTGTAATGTTCGGTAACCCAGAAACTACAACTGGTG
GTAATGCTCTTAAATTCTATGCATCTGTAAGAATCGATATCCGTAAGGCAAGTGCACCAATCAAACAAGGTGACGAGGCT
GTAGGTAGCCGTGTGAAAGTGAAAATTGTAAAAAATAAAGTAGCACCTCCTTTCAAACAAGCAGAATTCGACATTATGTA
CGGTGAGGGAGTTTCCAAAGTAGGAGAAATTCTGGATCAGGGTGTTGAATTAGGAGTTATTCAGAAAAGCGGTTCATGGT
TTAGCTATAATGACACTAAATTAGGTCAGGGTCGCGATGCAGTGAAAGACGTTATCAAAGATAATCCGGAACTTCAGGAA
GAATTAGAAGAAAAAATCAAAGAGAAGATCAACGCAAACTAG

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-272)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	82.09	100	0.826
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.832	98.198	0.637
recA	Helicobacter pylori 26695	62.275	100	0.625
recA	Helicobacter pylori strain NCTC11637	62.275	100	0.625
recA	Bacillus subtilis subsp. subtilis str. 168	64.087	96.997	0.622
recA	Glaesserella parasuis strain SC1401	62.918	98.799	0.622
recA	Neisseria gonorrhoeae strain FA1090	63.58	97.297	0.619
recA	Neisseria gonorrhoeae MS11	63.58	97.297	0.619
recA	Neisseria gonorrhoeae MS11	63.58	97.297	0.619
recA	Ralstonia pseudosolanacearum GMI1000	65.495	93.994	0.616
recA	Acinetobacter baumannii D1279779	62.27	97.898	0.61
recA	Pseudomonas stutzeri DSM 10701	61.702	98.799	0.61
recA	Streptococcus pyogenes NZ131	60.909	99.099	0.604
recA	Acinetobacter baylyi ADP1	61.656	97.898	0.604
recA	Streptococcus mitis SK321	61.35	97.898	0.601
recA	Streptococcus mitis NCTC 12261	61.35	97.898	0.601
recA	Streptococcus mutans UA159	60.245	98.198	0.592
recA	Lactococcus lactis subsp. cremoris KW2	60.123	97.898	0.589
recA	Streptococcus pneumoniae Rx1	59.756	98.498	0.589
recA	Streptococcus pneumoniae D39	59.756	98.498	0.589
recA	Streptococcus pneumoniae R6	59.756	98.498	0.589
recA	Streptococcus pneumoniae TIGR4	59.756	98.498	0.589
recA	Vibrio cholerae O1 biovar El Tor strain E7946	59.816	97.898	0.586
recA	Vibrio cholerae strain A1552	59.816	97.898	0.586
recA	Latilactobacillus sakei subsp. sakei 23K	60.062	96.997	0.583
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	56.193	99.399	0.559