Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FAY30_RS09405 Genome accession   NZ_CP039727
Coordinates   1956943..1957986 (+) Length   347 a.a.
NCBI ID   WP_149869637.1    Uniprot ID   -
Organism   Bacillus sp. S3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1951943..1962986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAY30_RS09380 (FAY30_09380) - 1952229..1952486 (+) 258 WP_149869632.1 DUF3243 domain-containing protein -
  FAY30_RS09385 (FAY30_09385) - 1952665..1953453 (+) 789 WP_190284854.1 DUF3388 domain-containing protein -
  FAY30_RS09390 (FAY30_09390) - 1953474..1954376 (+) 903 WP_149869634.1 helix-turn-helix domain-containing protein -
  FAY30_RS09395 (FAY30_09395) pgsA 1954428..1955012 (+) 585 WP_149869635.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FAY30_RS09400 (FAY30_09400) cinA 1955037..1956290 (+) 1254 WP_149869636.1 competence/damage-inducible protein A Machinery gene
  FAY30_RS27795 - 1956537..1956659 (+) 123 WP_263315314.1 hypothetical protein -
  FAY30_RS09405 (FAY30_09405) recA 1956943..1957986 (+) 1044 WP_149869637.1 recombinase RecA Machinery gene
  FAY30_RS09410 (FAY30_09410) rny 1958308..1959867 (+) 1560 WP_149869638.1 ribonuclease Y -
  FAY30_RS09415 (FAY30_09415) - 1959953..1960750 (+) 798 WP_149869639.1 TIGR00282 family metallophosphoesterase -
  FAY30_RS09420 (FAY30_09420) spoVS 1960920..1961180 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37750.02 Da        Isoelectric Point: 5.0101

>NTDB_id=360459 FAY30_RS09405 WP_149869637.1 1956943..1957986(+) (recA) [Bacillus sp. S3]
MSDRKAALEMALKQIEKQFGKGSIMKMGEQTETRISTVPSGSLALDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPTYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAVFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEALKQGTDIVGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDIGSELDIVQKSGSWYSYNDERVGQGRENAKLFLKENPELRQEIQQK
IREHYGLDGDKVVTEAEEDDEQFKLLD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=360459 FAY30_RS09405 WP_149869637.1 1956943..1957986(+) (recA) [Bacillus sp. S3]
GTGAGTGATCGTAAAGCGGCATTAGAAATGGCGTTAAAGCAAATAGAAAAACAATTTGGTAAAGGCTCCATCATGAAAAT
GGGTGAACAAACGGAGACTAGAATTTCTACCGTTCCGAGTGGATCTCTTGCGCTTGATGCAGCACTTGGAGTAGGCGGAT
ATCCTAGAGGCCGTATTATCGAGATTTATGGCCCAGAAAGTTCAGGTAAAACAACTGTAGCACTTCACGCAATTGCCGAA
GTGCAAGCAAAAGGGGGACAAGCAGCGTTTATTGATGCTGAACATGCCCTGGACCCGACATATGCACAAAAATTAGGTGT
TAACATCGATGAGTTATTGTTATCACAGCCTGACACAGGTGAACAAGCACTTGAAATCGCTGAAGCATTAGTGCGAAGCG
GTGCCGTTGATATTCTTGTTATTGACTCAGTTGCTGCATTAGTTCCAAAAGCAGAAATTGAAGGCGAAATGGGTGACGCT
CACGTAGGTCTTCAAGCGCGGTTGATGTCCCAAGCACTGCGTAAACTATCAGGCGCCATCAACAAGTCGAAGACAATTGC
TGTCTTCATTAACCAAATTCGTGAAAAAGTTGGAATCATGTTTGGAAACCCCGAAACAACCCCTGGGGGCCGTGCGCTGA
AGTTCTATTCGACAATCCGTCTAGAAGTACGCCGTGCTGAAGCGTTAAAACAAGGAACTGACATAGTCGGAAATAAAACG
AAAATTAAAGTAGTAAAGAACAAAGTTGCACCACCATTCCGTACCGCTGAAGTAGATATTATGTACGGTGAAGGTATTTC
CAAAGAGGGTGAAATCATCGATATAGGTTCAGAATTAGATATCGTTCAAAAGAGCGGTTCATGGTATTCCTATAACGATG
AAAGAGTAGGTCAGGGCCGCGAAAATGCGAAGCTATTCTTAAAGGAAAACCCTGAGCTCCGCCAGGAAATTCAACAAAAA
ATCCGTGAACACTATGGTTTAGACGGTGATAAAGTAGTAACAGAAGCAGAAGAAGATGATGAGCAGTTTAAATTGCTAGA
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.688

95.965

0.842
  recA Latilactobacillus sakei subsp. sakei 23K

72.965

99.135

0.723
  recA Streptococcus pneumoniae Rx1

66.667

100

0.669
  recA Streptococcus pneumoniae D39

66.667

100

0.669
  recA Streptococcus pneumoniae R6

66.667

100

0.669
  recA Streptococcus pneumoniae TIGR4

66.667

100

0.669
  recA Streptococcus mitis SK321

66.181

98.847

0.654
  recA Streptococcus mitis NCTC 12261

66.181

98.847

0.654
  recA Streptococcus mutans UA159

68.389

94.813

0.648
  recA Streptococcus pyogenes NZ131

67.378

94.524

0.637
  recA Lactococcus lactis subsp. cremoris KW2

65.476

96.83

0.634
  recA Ralstonia pseudosolanacearum GMI1000

67.278

94.236

0.634
  recA Neisseria gonorrhoeae strain FA1090

64.327

98.559

0.634
  recA Neisseria gonorrhoeae MS11

64.327

98.559

0.634
  recA Neisseria gonorrhoeae MS11

64.327

98.559

0.634
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.471

97.983

0.602
  recA Helicobacter pylori strain NCTC11637

63.077

93.66

0.591
  recA Glaesserella parasuis strain SC1401

60.294

97.983

0.591
  recA Pseudomonas stutzeri DSM 10701

63.75

92.219

0.588
  recA Helicobacter pylori 26695

62.769

93.66

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

94.236

0.585
  recA Acinetobacter baylyi ADP1

58.333

100

0.585
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.928

92.507

0.582
  recA Vibrio cholerae strain A1552

62.928

92.507

0.582
  recA Acinetobacter baumannii D1279779

58.261

99.424

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

92.219

0.553

Multiple sequence alignment