Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GOBS_RS19095 Genome accession   NC_013757
Coordinates   4106593..4107627 (-) Length   344 a.a.
NCBI ID   WP_012949913.1    Uniprot ID   -
Organism   Geodermatophilus obscurus DSM 43160     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4101593..4112627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOBS_RS19070 (Gobs_3914) - 4101792..4102439 (+) 648 WP_012949908.1 amino acid ABC transporter permease -
  GOBS_RS19075 (Gobs_3915) - 4102436..4103341 (+) 906 WP_012949909.1 amino acid ABC transporter permease -
  GOBS_RS19080 (Gobs_3916) - 4103416..4103859 (+) 444 WP_012949910.1 hypothetical protein -
  GOBS_RS19085 (Gobs_3917) ctaD 4103960..4105720 (+) 1761 WP_012949911.1 cytochrome c oxidase subunit I -
  GOBS_RS19090 (Gobs_3918) - 4105922..4106590 (-) 669 WP_012949912.1 regulatory protein RecX -
  GOBS_RS19095 (Gobs_3919) recA 4106593..4107627 (-) 1035 WP_012949913.1 recombinase RecA Machinery gene
  GOBS_RS19100 (Gobs_3920) - 4107817..4108011 (-) 195 WP_041241587.1 DUF3046 domain-containing protein -
  GOBS_RS19105 (Gobs_3922) - 4108168..4109436 (-) 1269 WP_012949916.1 MFS transporter -
  GOBS_RS19110 (Gobs_3923) - 4109449..4110594 (-) 1146 WP_012949917.1 acyl-CoA dehydrogenase family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36619.80 Da        Isoelectric Point: 4.9356

>NTDB_id=36024 GOBS_RS19095 WP_012949913.1 4106593..4107627(-) (recA) [Geodermatophilus obscurus DSM 43160]
MATLDRDKALDMALAQIDKQFGKGSVMRLGDSPEVAMKVIPTGSIALDIALGIGGLPRGRVIEVYGPEASGKTTVALHAV
ANAQAAGGIAAFIDAEHALDPEYARAIGVDTDALLVSQPDTGEQALEIADMLIRSGALDVIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITGALNNSGTTAIFINQLREKVGVVYGSPEVTTGGRALKFYSSVRLDVRRIETLKQGTEAVGS
RVRVKVVKNKVAAPFKQAELDLLWGQGFSREGGLIDAGVEQGFIRKSGAWYTYEGDQLGQGKENVRTFLRDNPDLADEIE
KKVKEKLGIGAKLDEPVVADQPDF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=36024 GOBS_RS19095 WP_012949913.1 4106593..4107627(-) (recA) [Geodermatophilus obscurus DSM 43160]
ATGGCAACGCTCGACCGTGACAAGGCCCTCGACATGGCCCTCGCCCAGATCGACAAGCAGTTCGGCAAGGGGTCGGTGAT
GCGGCTGGGGGACAGCCCCGAGGTCGCGATGAAGGTCATCCCGACCGGCTCCATCGCCCTCGACATCGCCCTCGGTATCG
GTGGCCTACCGCGCGGCCGCGTCATCGAAGTGTACGGCCCCGAGGCCTCCGGCAAGACGACGGTCGCCCTGCACGCGGTG
GCCAACGCGCAGGCCGCCGGCGGTATCGCGGCCTTCATCGACGCCGAGCACGCGCTCGACCCCGAGTACGCCCGGGCCAT
CGGCGTCGACACCGACGCGCTCCTGGTCAGCCAGCCCGACACCGGTGAGCAGGCGCTGGAGATCGCCGACATGCTCATCC
GCTCCGGCGCGCTCGACGTCATCGTCATCGACTCGGTCGCCGCGCTCGTGCCGCGCGCCGAGATCGAGGGTGAGATGGGC
GACAGCCACGTCGGTCTGCAGGCCCGGCTGATGAGCCAGGCGCTCCGGAAGATCACCGGTGCGCTGAACAACTCCGGCAC
CACCGCGATCTTCATCAACCAGCTGCGCGAGAAGGTCGGCGTCGTCTACGGCTCGCCGGAGGTCACCACCGGTGGTCGCG
CGCTGAAGTTCTACTCGTCGGTCCGGCTCGACGTCCGCCGCATCGAGACCCTCAAGCAGGGCACCGAGGCGGTCGGCAGC
CGGGTCCGCGTGAAGGTCGTCAAGAACAAGGTCGCCGCGCCGTTCAAGCAGGCCGAGCTCGACCTGCTGTGGGGTCAGGG
CTTCAGCCGTGAGGGCGGCCTGATCGACGCCGGCGTCGAGCAGGGCTTCATCCGCAAGTCCGGCGCCTGGTACACGTACG
AGGGCGATCAGCTCGGCCAGGGCAAGGAGAACGTCCGCACCTTCCTGCGCGACAACCCCGACCTCGCCGACGAGATCGAG
AAGAAGGTCAAGGAGAAGCTGGGCATCGGCGCGAAGCTGGATGAGCCGGTCGTGGCCGACCAGCCCGACTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

94.477

0.616
  recA Latilactobacillus sakei subsp. sakei 23K

61.516

99.709

0.613
  recA Pseudomonas stutzeri DSM 10701

64.087

93.895

0.602
  recA Acinetobacter baumannii D1279779

63.777

93.895

0.599
  recA Acinetobacter baylyi ADP1

63.467

93.895

0.596
  recA Lactococcus lactis subsp. cremoris KW2

60.177

98.547

0.593
  recA Neisseria gonorrhoeae MS11

61.145

96.512

0.59
  recA Neisseria gonorrhoeae MS11

61.145

96.512

0.59
  recA Neisseria gonorrhoeae strain FA1090

61.145

96.512

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.27

94.767

0.59
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.539

93.895

0.587
  recA Vibrio cholerae strain A1552

62.539

93.895

0.587
  recA Streptococcus mutans UA159

61.398

95.64

0.587
  recA Streptococcus pyogenes NZ131

61.585

95.349

0.587
  recA Ralstonia pseudosolanacearum GMI1000

64.217

90.988

0.584
  recA Helicobacter pylori 26695

58.876

98.256

0.578
  recA Helicobacter pylori strain NCTC11637

58.876

98.256

0.578
  recA Streptococcus pneumoniae R6

60.486

95.64

0.578
  recA Streptococcus pneumoniae TIGR4

60.486

95.64

0.578
  recA Streptococcus mitis NCTC 12261

60.486

95.64

0.578
  recA Streptococcus pneumoniae Rx1

60.486

95.64

0.578
  recA Streptococcus pneumoniae D39

60.486

95.64

0.578
  recA Streptococcus mitis SK321

60.182

95.64

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

93.023

0.561
  recA Glaesserella parasuis strain SC1401

58.696

93.605

0.549
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.535

95.64

0.541

Multiple sequence alignment