Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I33_RS06040 Genome accession   NC_017195
Coordinates   1204347..1206176 (+) Length   609 a.a.
NCBI ID   WP_187955983.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1199347..1211176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS06015 (I33_1281) yjbC 1200021..1200599 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  I33_RS06020 (I33_1282) spx 1200780..1201175 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  I33_RS06025 (I33_1283) yjbE 1201216..1201872 (-) 657 WP_003232944.1 TerC family protein -
  I33_RS20900 - 1202042..1202182 (+) 141 WP_119122854.1 hypothetical protein -
  I33_RS06030 (I33_1284) mecA 1202149..1202805 (+) 657 WP_014476436.1 adaptor protein MecA Regulator
  I33_RS20905 (I33_1285) - 1202800..1202922 (-) 123 WP_003245684.1 hypothetical protein -
  I33_RS06035 (I33_1286) coiA 1202966..1204117 (+) 1152 WP_014476437.1 competence protein CoiA Machinery gene
  I33_RS06040 (I33_1287) pepF 1204347..1206176 (+) 1830 WP_187955983.1 oligoendopeptidase F Regulator
  I33_RS20175 (I33_1288) - 1206214..1206381 (-) 168 WP_003244944.1 hypothetical protein -
  I33_RS06050 (I33_1289) spxH 1206696..1207595 (-) 900 WP_014476439.1 protease adaptor protein SpxH -
  I33_RS06055 (I33_1290) bhbI 1207592..1207990 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  I33_RS06060 (I33_1291) cwlQ 1208241..1208975 (-) 735 WP_014476440.1 bifunctional muramidase/murein lytic transglycosylase -
  I33_RS06065 (I33_1292) yjbK 1208990..1209562 (-) 573 WP_014476441.1 CYTH domain-containing protein -
  I33_RS06070 (I33_1293) - 1209687..1210055 (+) 369 WP_014476442.1 hypothetical protein -
  I33_RS06075 (I33_1294) yjbM 1210084..1210719 (+) 636 WP_003245294.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70129.96 Da        Isoelectric Point: 5.1000

>NTDB_id=35960 I33_RS06040 WP_187955983.1 1204347..1206176(+) (pepF) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MAEEKKANQLPDRSEVKAEDTWRLEDIFPSDEDWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLY
TYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEK
EEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGM
KVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLTNVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIDFL
KAGSSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEMEELLMKVKQS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=35960 I33_RS06040 WP_187955983.1 1204347..1206176(+) (pepF) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
ATGGCTGAGGAAAAAAAAGCAAACCAACTGCCTGACAGAAGTGAGGTAAAGGCAGAAGACACATGGAGACTTGAGGATAT
TTTTCCTAGTGATGAGGACTGGAATAAAGAATTTCAAGCTGTAAAAGAATTAATTCCGAATTTATCTAAGTATAAAGGAA
AGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGATAAAGTGATGGAGCGGCTGGGTAGGCTGTAC
ACATATGCGCATATGCGCTCTGACCAGGATACTGGGAACTCCTTTTACCAGGGGCTGAATGACAAGGCGGGAAACCTGTA
TACACAGGCCGCAAGCGCGACAGCTTATTTGGTTCCGGAGATTTTATCCATAGAAGAAGACAAACTGCAGCAGTTCATTC
TTGAAAAAGAGGAATTGAAGCTGTACTCTCATGCGATTGAGGAGATTACAAAGGAACGTCCGCATGTGCTGAGCGAGAAG
GAAGAGGCGCTGCTTGCTGAAGCCTCCGAGGTACTGGGGTCATCTTCAAATACATTCAGCGTGTTAAATAACGCAGATAT
AACGTTTCCGTCTATTAAAGACGAAGATGGGAATGAAAAACAGATCACTCACGGCAACTTTATTAATTTCTTGGAAAGTG
AAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTACGGACAATATAAAAACACAATGGCCACGACG
CTAAGCGGCACTGTTAAAAAGGACAACTTCTACGCGAGAGTGAAAAAGTACAAGTCCGCGCGTGAGGCTGCGCTTTCTAA
CAACAGTATTCCTGAGGAAGTCTACGATAACCTTGTTAAGACGATTAATAAGCATTTGCCGCTCCTGCACCGCTATATTG
CGCTGAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTGTATACACCGCTTGTGAAAGATGCAGGGATG
AAGGTAACATACGAGGAAGCCAAAGATTACATGCTGAAAGGCCTTGCACCTTTAGGGGAAGAATATGCCTCTATCCTAAA
AGAAGGACTGGAAAACCGCTGGGTGGACGTTTACGAAAATAAAGGCAAACGCAATGGGGCTTATTCATCAGGAGCTTACG
GCACGAATCCGTATATTTTGATGAACTGGCATAATAACGTCAATAATCTCTTTACGCTCGTGCACGAGTTTGGACATTCC
GTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATACGGCAATTACAGCATCTTTGTCGCGGAAGTTGCCTCTAC
GACAAATGAGGCGCTCCTAGGCGAATATTTGCTGAACAATTTAGAGGATGAAAAACAGCGCTTATATATTCTCAACCATA
TGCTTGAGGGCTTCAGAGGAACGGTCTTCAGACAAACGATGTTTGCTGAATTTGAACATCTGATCCATACAAAGGCGCAA
GAAGGCGAGCCACTTACACCTGAGCTTCTGACAAATGTCTATTACGATCTGAATAAAAAGTATTTTGGAGACGGCATGGT
GATTGATAAGGAAATCGGCCTTGAATGGTCGCGTATTCCGCACTTCTATTACAATTACTATGTGTATCAGTATGCGACAG
GGTACAGCGCTGCCCAAGCATTAAGCAGCCAGATTTTGAAGGAAGGAAAGCCGGCGGTTGACCGTTATATTGACTTCCTG
AAAGCGGGAAGTTCACAATACCCGATTGATGTCTTGAAAAAAGCGGGTGTTGATATGACGTCTCCAGAGCCAATCGAAGC
CGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGATGAAAGTCAAGCAGTCTTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.99

97.537

0.478

Multiple sequence alignment