Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ROD_RS15330 Genome accession   NC_013716
Coordinates   3282126..3283187 (+) Length   353 a.a.
NCBI ID   WP_012907232.1    Uniprot ID   D2TLF9
Organism   Citrobacter rodentium ICC168     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3277126..3288187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ROD_RS15300 (ROD_31091) srlD 3277286..3278065 (-) 780 WP_012907226.1 sorbitol-6-phosphate dehydrogenase -
  ROD_RS15305 (ROD_31101) srlB 3278076..3278438 (-) 363 WP_012907227.1 PTS glucitol/sorbitol transporter subunit IIA -
  ROD_RS15310 (ROD_31111) - 3278450..3279421 (-) 972 WP_012907228.1 PTS glucitol/sorbitol transporter subunit IIB -
  ROD_RS15315 (ROD_31121) srlA 3279418..3279981 (-) 564 WP_012907229.1 PTS glucitol/sorbitol transporter subunit IIC -
  ROD_RS15320 (ROD_31131) mltB 3280244..3281323 (+) 1080 WP_012907230.1 lytic murein transglycosylase B -
  ROD_RS15325 (ROD_31141) pncC 3281536..3282033 (+) 498 WP_012907231.1 nicotinamide-nucleotide amidase -
  ROD_RS15330 (ROD_31151) recA 3282126..3283187 (+) 1062 WP_012907232.1 recombinase RecA Machinery gene
  ROD_RS15335 (ROD_31161) recX 3283300..3283800 (+) 501 WP_012907233.1 recombination regulator RecX -
  ROD_RS15345 (ROD_31171) alaS 3284008..3286635 (+) 2628 WP_012907234.1 alanine--tRNA ligase -
  ROD_RS15350 (ROD_31181) csrA 3286874..3287059 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37946.26 Da        Isoelectric Point: 4.7456

>NTDB_id=35960 ROD_RS15330 WP_012907232.1 3282126..3283187(+) (recA) [Citrobacter rodentium ICC168]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATTWLKENPATAKEI
EKKVRELLLNNQDSTPDFSVDDGEGVAETNEDF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=35960 ROD_RS15330 WP_012907232.1 3282126..3283187(+) (recA) [Citrobacter rodentium ICC168]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGCTCCATGGATGTGGAAACCATCTCCACCGGTTCGCTTTCACTGGATATCGCCCTGGGCG
CAGGCGGCCTGCCGATGGGCCGTATCGTTGAAATTTACGGTCCGGAATCATCCGGTAAAACTACGCTGACGTTACAGGTG
ATCGCCGCAGCGCAGCGCGAAGGTAAAACCTGCGCGTTTATCGATGCGGAACATGCGCTGGACCCTGTTTATGCGCGCAA
GCTGGGCGTCGATATCGACAACCTGCTCTGCTCACAGCCGGATACCGGCGAGCAGGCGCTGGAAATCTGTGACGCGCTGG
CGCGCTCCGGCGCCGTTGACGTTATCGTCGTCGACTCCGTTGCGGCGCTGACGCCGAAAGCGGAGATTGAAGGCGAAATC
GGCGACTCTCACATGGGCCTCGCGGCGCGTATGATGAGTCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATCGGCGTTATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTATGCCTCTGTTCGTCTGGACATCCGTCGTATCGGCGCGGTAAAAGAGGGCGATAACGTGGTGGGT
AGCGAAACCCGCGTGAAGGTGGTGAAGAACAAAATCGCCGCGCCGTTTAAACAGGCCGAGTTCCAGATCCTCTATGGTGA
AGGGATCAACTTCTATGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATCGAGAAAGCGGGCGCATGGTACAGCT
ATAACGGCGAGAAAATTGGTCAGGGTAAAGCGAATGCCACTACCTGGCTGAAAGAGAACCCGGCTACCGCCAAAGAGATT
GAGAAAAAGGTTCGCGAGCTGCTGCTCAACAACCAGGACTCCACGCCGGACTTCTCCGTTGACGACGGTGAAGGCGTGGC
GGAAACCAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2TLF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.592

93.768

0.793
  recA Vibrio cholerae strain A1552

84.592

93.768

0.793
  recA Pseudomonas stutzeri DSM 10701

74.184

95.467

0.708
  recA Acinetobacter baumannii D1279779

74.924

92.635

0.694
  recA Acinetobacter baylyi ADP1

74.618

92.635

0.691
  recA Glaesserella parasuis strain SC1401

68.876

98.3

0.677
  recA Neisseria gonorrhoeae MS11

69.325

92.351

0.64
  recA Neisseria gonorrhoeae MS11

69.325

92.351

0.64
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.351

0.64
  recA Ralstonia pseudosolanacearum GMI1000

71.383

88.102

0.629
  recA Streptococcus mitis SK321

60

99.15

0.595
  recA Streptococcus mitis NCTC 12261

60

99.15

0.595
  recA Streptococcus pneumoniae Rx1

60.057

98.584

0.592
  recA Streptococcus pneumoniae TIGR4

60.057

98.584

0.592
  recA Streptococcus pneumoniae R6

60.057

98.584

0.592
  recA Streptococcus pneumoniae D39

60.057

98.584

0.592
  recA Helicobacter pylori strain NCTC11637

61.424

95.467

0.586
  recA Helicobacter pylori 26695

61.128

95.467

0.584
  recA Streptococcus pyogenes NZ131

62.462

92.068

0.575
  recA Lactococcus lactis subsp. cremoris KW2

62.848

91.501

0.575
  recA Streptococcus mutans UA159

62.154

92.068

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.935

0.572
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

91.785

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

92.068

0.564
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

94.051

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

90.935

0.555

Multiple sequence alignment