Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E8E00_RS10660 Genome accession   NZ_CP039516
Coordinates   2307253..2308299 (-) Length   348 a.a.
NCBI ID   WP_069591106.1    Uniprot ID   A0A2A4GMD1
Organism   Salinivibrio sp. YCSC6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2302253..2313299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8E00_RS10645 (E8E00_10645) csrA 2303434..2303631 (-) 198 WP_069591103.1 carbon storage regulator CsrA -
  E8E00_RS10650 (E8E00_10650) alaS 2304075..2306657 (-) 2583 WP_096630991.1 alanine--tRNA ligase -
  E8E00_RS10655 (E8E00_10655) - 2306804..2307253 (-) 450 WP_240531929.1 regulatory protein RecX -
  E8E00_RS10660 (E8E00_10660) recA 2307253..2308299 (-) 1047 WP_069591106.1 recombinase RecA Machinery gene
  E8E00_RS10665 (E8E00_10665) - 2308433..2308915 (-) 483 WP_069591108.1 CinA family protein -
  E8E00_RS10670 (E8E00_10670) mutS 2309024..2311603 (+) 2580 WP_096630989.1 DNA mismatch repair protein MutS -
  E8E00_RS10675 (E8E00_10675) rpoS 2311672..2312646 (-) 975 WP_069591112.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37596.06 Da        Isoelectric Point: 5.0463

>NTDB_id=359441 E8E00_RS10660 WP_069591106.1 2307253..2308299(-) (recA) [Salinivibrio sp. YCSC6]
MDDNKEKALAAALGQIEKQFGKGSIMRLGDDRTMDIETVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQAIA
EAQKMGKTCAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDMIVIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTANIKNSNTLMVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGND
TRVKVVKNKVAAPFKQAEFQILYGQGINLHGELIDLGVKHKLVEKAGAWYSYKGDKIGQGKANACKYLKENPHIAKELDT
TLREMLLQTALNNEVVEADAQAETEDDL

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=359441 E8E00_RS10660 WP_069591106.1 2307253..2308299(-) (recA) [Salinivibrio sp. YCSC6]
ATGGACGATAACAAAGAAAAGGCGCTTGCCGCTGCGCTTGGACAAATCGAAAAGCAATTTGGTAAAGGCTCTATTATGCG
CCTTGGCGATGACCGCACCATGGACATCGAAACCGTATCGACCGGCTCATTGTCTCTGGATATTGCGCTAGGGGCGGGGG
GATTGCCATTTGGCCGTATTGTTGAAATTTATGGTCCGGAATCATCGGGTAAAACAACCCTGACCCTACAAGCGATTGCC
GAAGCCCAAAAAATGGGCAAAACCTGTGCGTTTATCGATGCCGAGCACGCACTAGATCCTGTTTACGCCCGTAAGTTAGG
TGTCGATATTGATAACCTTTTGGTGTCACAGCCAGACACAGGTGAGCAAGCGCTGGAAATTGCGGATGCACTGACCCGCT
CCGGTGCTGTCGATATGATCGTGATTGACTCGGTAGCGGCGTTGACACCAAAAGCGGAAATTGAAGGTGAGATGGGTGAT
TCGCACATGGGTCTTCAGGCACGCATGCTGTCACAAGCGATGCGTAAATTGACCGCCAACATCAAAAACAGCAACACCTT
GATGGTATTCATCAACCAAATCCGGATGAAGATTGGTGTGATGTTCGGTAACCCCGAAACCACCACGGGTGGTAACGCAC
TGAAATTCTATGCGTCGGTGCGCTTGGATATTCGTCGTATTGGTGCGATCAAAGAAGGCGACGAAGTGGTCGGTAACGAC
ACCCGAGTGAAAGTGGTGAAAAACAAAGTCGCGGCGCCCTTTAAGCAAGCTGAATTCCAAATTCTTTATGGACAAGGCAT
TAACCTGCATGGCGAACTGATTGATCTCGGGGTCAAGCACAAGCTGGTCGAGAAAGCGGGTGCGTGGTACAGCTACAAAG
GCGATAAAATTGGCCAAGGTAAAGCTAACGCCTGTAAGTACCTCAAAGAAAACCCACATATTGCGAAAGAGCTCGATACC
ACATTGCGTGAAATGCTGTTGCAAACCGCATTGAATAACGAAGTGGTAGAAGCTGACGCGCAGGCAGAAACAGAAGACGA
TTTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A4GMD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

85.933

93.966

0.807
  recA Vibrio cholerae O1 biovar El Tor strain E7946

85.933

93.966

0.807
  recA Acinetobacter baumannii D1279779

73.276

100

0.733
  recA Acinetobacter baylyi ADP1

72.989

100

0.73
  recA Pseudomonas stutzeri DSM 10701

75.449

95.977

0.724
  recA Glaesserella parasuis strain SC1401

71.302

97.126

0.693
  recA Neisseria gonorrhoeae MS11

70.552

93.678

0.661
  recA Neisseria gonorrhoeae MS11

70.552

93.678

0.661
  recA Neisseria gonorrhoeae strain FA1090

70.552

93.678

0.661
  recA Ralstonia pseudosolanacearum GMI1000

71.835

90.805

0.652
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.204

91.667

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.048

95.402

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

64.174

92.241

0.592
  recA Streptococcus pneumoniae D39

63.467

92.816

0.589
  recA Streptococcus pneumoniae TIGR4

63.467

92.816

0.589
  recA Streptococcus pneumoniae R6

63.467

92.816

0.589
  recA Streptococcus pneumoniae Rx1

63.467

92.816

0.589
  recA Streptococcus mitis NCTC 12261

63.158

92.816

0.586
  recA Streptococcus mitis SK321

62.848

92.816

0.583
  recA Helicobacter pylori strain NCTC11637

61.774

93.966

0.58
  recA Helicobacter pylori 26695

61.468

93.966

0.578
  recA Streptococcus mutans UA159

61.231

93.391

0.572
  recA Streptococcus pyogenes NZ131

60.923

93.391

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

61.682

92.241

0.569
  recA Lactococcus lactis subsp. cremoris KW2

60.372

92.816

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.905

90.517

0.56

Multiple sequence alignment