Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BDP_RS06885 Genome accession   NC_013714
Coordinates   1598320..1599480 (-) Length   386 a.a.
NCBI ID   WP_003841471.1    Uniprot ID   D2QB43
Organism   Bifidobacterium dentium Bd1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1593320..1604480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDP_RS06870 (BDP_1418) secA 1593384..1596260 (-) 2877 WP_012902275.1 preprotein translocase subunit SecA -
  BDP_RS06875 (BDP_1419) hpf 1596453..1597109 (-) 657 WP_003839643.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  BDP_RS11130 - 1597639..1598316 (-) 678 WP_074695997.1 regulatory protein RecX -
  BDP_RS06885 (BDP_1421) recA 1598320..1599480 (-) 1161 WP_003841471.1 recombinase RecA Machinery gene
  BDP_RS06890 (BDP_1422) - 1599739..1599972 (-) 234 WP_012902278.1 DUF3046 domain-containing protein -
  BDP_RS06895 (BDP_1423) - 1600078..1600587 (-) 510 WP_003839635.1 helix-turn-helix domain-containing protein -
  BDP_RS06900 (BDP_1424) - 1600649..1601212 (-) 564 WP_003839632.1 CinA family protein -
  BDP_RS06905 (BDP_1425) pgsA 1601218..1601877 (-) 660 WP_003841467.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 386 a.a.        Molecular weight: 40824.26 Da        Isoelectric Point: 5.5833

>NTDB_id=35942 BDP_RS06885 WP_003841471.1 1598320..1599480(-) (recA) [Bifidobacterium dentium Bd1]
MAQTNAAAKGAVQNQAANGIDPRRQAALETALAQVEKNFGKGSAMRLGDRPEQDVEVIPTGSLALDMALGIGGLPKGRIV
EIYGPESSGKTTLALHVVANAQKKGGVAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIV
IDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVR
MDIRRIQTIKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDVLYGEGISKEGSVLDMALQVNVVKKSGSWFTYDGDQLGQGR
ENVRQFLKDNPGVTEEIENRVKAAFGLIEPTDQFAEDGDGNETAASESGKGESKTAKGAKPASTKA

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=35942 BDP_RS06885 WP_003841471.1 1598320..1599480(-) (recA) [Bifidobacterium dentium Bd1]
ATGGCACAGACGAATGCAGCGGCGAAAGGCGCCGTGCAGAACCAAGCCGCCAACGGCATTGACCCCCGTCGCCAGGCCGC
GCTGGAAACGGCGTTGGCGCAGGTCGAGAAAAACTTCGGTAAGGGATCGGCCATGCGTCTGGGGGACCGCCCGGAGCAGG
ACGTCGAGGTCATTCCGACCGGTTCGTTGGCTCTTGATATGGCATTGGGCATCGGAGGTCTGCCGAAGGGTCGCATTGTC
GAGATTTACGGCCCGGAATCCTCCGGTAAGACCACGCTCGCGTTGCATGTCGTGGCCAATGCGCAGAAGAAGGGCGGCGT
CGCTGCGTTCATCGATGCCGAGCATGCACTCGATCCGGTGTATGCCCGCAAGCTGGGTGTCGATACCGATTCGCTGATCG
TGTCCCAGCCCGACAATGGTGAGCAGGCGTTGGAAATCGCCGATATGCTGATTCGTTCCGGCGCACTTGACGTCATCGTC
ATCGATTCCGTGGCCGCGTTGGTGCCGAAGGCCGAAATCGAAGGTGAAATGGGCGACAGCCATGTCGGTCTGCAGGCAAG
GCTCATGAGCCAGGCCTTGCGCAAGATGACCGGTGCGCTGGCCCAGGCCGGCACCACGGCAATCTTCATCAACCAGTTGC
GCGAGAAGATCGGTGTGTTCTTCGGCAATCCGGAGACCACCACCGGTGGTAAGGCGCTGAAGTTCTATGCTTCGGTACGC
ATGGATATCCGCCGCATACAGACCATCAAGAACGGTGACGAGGCCGTGGGCAACCGCACTAGGGTCAAGGTCGTGAAGAA
CAAGATGGCTCCGCCGTTCAAGTCCGCTGAATTCGACGTGCTCTACGGCGAGGGTATCTCCAAGGAAGGTTCCGTGCTCG
ACATGGCCTTGCAAGTCAATGTCGTCAAAAAATCCGGCTCCTGGTTCACCTACGATGGTGACCAGCTTGGTCAGGGCCGT
GAAAACGTACGTCAGTTCCTTAAGGACAATCCTGGGGTCACCGAAGAAATCGAAAATCGGGTGAAGGCTGCGTTTGGACT
GATTGAACCGACTGATCAGTTCGCTGAAGACGGCGATGGGAATGAGACTGCGGCAAGCGAAAGCGGCAAAGGCGAGTCGA
AGACGGCAAAGGGCGCCAAACCGGCATCGACCAAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(27-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2QB43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

63.557

88.86

0.565
  recA Streptococcus mitis SK321

61.207

90.155

0.552
  recA Acinetobacter baumannii D1279779

65.944

83.679

0.552
  recA Streptococcus mitis NCTC 12261

60.92

90.155

0.549
  recA Pseudomonas stutzeri DSM 10701

64.724

84.456

0.547
  recA Glaesserella parasuis strain SC1401

62.388

86.788

0.541
  recA Bacillus subtilis subsp. subtilis str. 168

64.198

83.938

0.539
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64

84.197

0.539
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.465

89.119

0.539
  recA Vibrio cholerae strain A1552

64.087

83.679

0.536
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.087

83.679

0.536
  recA Ralstonia pseudosolanacearum GMI1000

66.134

81.088

0.536
  recA Streptococcus pneumoniae R6

62.121

85.492

0.531
  recA Streptococcus pneumoniae Rx1

62.121

85.492

0.531
  recA Streptococcus pneumoniae D39

62.121

85.492

0.531
  recA Streptococcus pneumoniae TIGR4

62.121

85.492

0.531
  recA Neisseria gonorrhoeae strain FA1090

64.762

81.606

0.528
  recA Neisseria gonorrhoeae MS11

64.762

81.606

0.528
  recA Neisseria gonorrhoeae MS11

64.762

81.606

0.528
  recA Lactococcus lactis subsp. cremoris KW2

60.961

86.269

0.526
  recA Latilactobacillus sakei subsp. sakei 23K

62.654

83.938

0.526
  recA Streptococcus pyogenes NZ131

61.212

85.492

0.523
  recA Streptococcus mutans UA159

60.909

85.492

0.521
  recA Helicobacter pylori strain NCTC11637

60.976

84.974

0.518
  recA Helicobacter pylori 26695

60.976

84.974

0.518
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.61

83.679

0.516

Multiple sequence alignment