Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E9099_RS06570 Genome accession   NZ_CP039451
Coordinates   1511735..1512739 (+) Length   334 a.a.
NCBI ID   WP_101015897.1    Uniprot ID   A0A2K8WW33
Organism   Psychroserpens sp. NJDZ02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1506735..1517739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E9099_RS06555 (E9099_06565) - 1508289..1508771 (-) 483 WP_136582886.1 gliding motility lipoprotein GldH -
  E9099_RS06560 (E9099_06570) - 1508758..1510038 (-) 1281 WP_136582887.1 stage 0 sporulation family protein -
  E9099_RS06565 (E9099_06575) - 1510227..1511291 (-) 1065 WP_136582888.1 rhodanese-related sulfurtransferase -
  E9099_RS06570 (E9099_06580) recA 1511735..1512739 (+) 1005 WP_101015897.1 recombinase RecA Machinery gene
  E9099_RS06575 (E9099_06585) - 1512839..1513246 (+) 408 WP_136582889.1 hypothetical protein -
  E9099_RS06580 (E9099_06590) - 1513274..1513816 (+) 543 WP_136582890.1 RNA polymerase sigma factor -
  E9099_RS19160 - 1513817..1515427 (+) 1611 WP_168800723.1 hypothetical protein -
  E9099_RS06595 (E9099_06605) - 1515492..1516229 (-) 738 WP_136582892.1 lysophospholipid acyltransferase family protein -
  E9099_RS06600 (E9099_06610) trpS 1516309..1517277 (+) 969 WP_136582893.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36059.61 Da        Isoelectric Point: 6.7456

>NTDB_id=358694 E9099_RS06570 WP_101015897.1 1511735..1512739(+) (recA) [Psychroserpens sp. NJDZ02]
MSKEKEAKLKALQLTLDKLDKAYGKGTVMKMSDAAVVDVEAIPSGSLGLDIALGVGGYPRGRVIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDIDNLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTASISKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDSNGGV
LGNKTRVKVVKNKVAPPFRMAEFDIMYGEGVSKVGEILDVAVEKEIIKKSGSWFSYGDTKLGQGRDAVKLIIKDNPELFD
ELEQKIKIAIKESV

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=358694 E9099_RS06570 WP_101015897.1 1511735..1512739(+) (recA) [Psychroserpens sp. NJDZ02]
ATGAGTAAAGAGAAAGAAGCAAAGCTAAAAGCATTACAATTAACCTTAGACAAATTAGACAAAGCCTACGGAAAAGGTAC
GGTAATGAAAATGAGTGATGCTGCTGTTGTTGATGTAGAGGCTATCCCATCGGGATCTTTAGGTTTGGATATTGCATTAG
GAGTTGGTGGTTACCCAAGAGGTAGAGTTATAGAAATATATGGCCCAGAATCTTCTGGAAAAACAACATTAACGCTTCAT
GCTATTGCAGAAGCACAAAAAGCAGGAGGTATTGCTGCATTTATTGATGCAGAACATGCTTTTGATAGATTTTACGCAGA
AAAATTAGGAGTAGATATTGACAACCTTATTATCTCTCAGCCAGATAATGGAGAGCAAGCTTTAGAAATTGCTGATAATT
TAATTAGATCAGGAGCTATTGATATTGTTGTAATTGACTCGGTTGCTGCATTAACGCCAAAAGCAGAAATTGAAGGCGAA
ATGGGTGACTCTAAAATGGGACTACATGCCCGTTTAATGTCACAAGCCCTTAGAAAATTAACTGCATCTATTAGTAAAAC
TAATTGTACAGTAATATTTATTAACCAGTTACGTGAAAAAATTGGTGTTATGTTTGGTAACCCAGAAACAACAACCGGTG
GTAACGCATTAAAATTTTACGCTTCTGTAAGATTAGACATCAGACGATCTACACAAATAAAAGATAGTAATGGTGGTGTA
TTAGGAAATAAAACCAGAGTTAAAGTAGTAAAAAATAAAGTTGCGCCACCTTTTAGAATGGCAGAATTCGACATCATGTA
TGGAGAAGGAGTTAGTAAAGTTGGAGAAATTTTAGATGTTGCTGTAGAAAAAGAAATCATCAAAAAAAGTGGTTCATGGT
TTAGTTATGGTGACACCAAACTAGGACAAGGACGAGATGCCGTTAAGCTGATTATAAAAGACAACCCAGAACTGTTTGAC
GAGCTGGAACAAAAAATAAAAATCGCTATTAAAGAAAGTGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K8WW33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

79.385

97.305

0.772
  recA Glaesserella parasuis strain SC1401

64.815

97.006

0.629
  recA Acinetobacter baylyi ADP1

65.312

95.808

0.626
  recA Ralstonia pseudosolanacearum GMI1000

67.314

92.515

0.623
  recA Acinetobacter baumannii D1279779

64.596

96.407

0.623
  recA Neisseria gonorrhoeae MS11

65.916

93.114

0.614
  recA Neisseria gonorrhoeae MS11

65.916

93.114

0.614
  recA Neisseria gonorrhoeae strain FA1090

65.916

93.114

0.614
  recA Helicobacter pylori strain NCTC11637

62.577

97.605

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.551

96.108

0.611
  recA Helicobacter pylori 26695

62.27

97.605

0.608
  recA Streptococcus mitis NCTC 12261

63.043

96.407

0.608
  recA Streptococcus mitis SK321

62.733

96.407

0.605
  recA Bacillus subtilis subsp. subtilis str. 168

63.722

94.91

0.605
  recA Pseudomonas stutzeri DSM 10701

61.846

97.305

0.602
  recA Lactococcus lactis subsp. cremoris KW2

61.92

96.707

0.599
  recA Streptococcus pneumoniae Rx1

62.305

96.108

0.599
  recA Streptococcus pneumoniae D39

62.305

96.108

0.599
  recA Streptococcus pneumoniae R6

62.305

96.108

0.599
  recA Streptococcus pneumoniae TIGR4

62.305

96.108

0.599
  recA Streptococcus pyogenes NZ131

61.728

97.006

0.599
  recA Vibrio cholerae strain A1552

61.18

96.407

0.59
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.18

96.407

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

60.615

97.305

0.59
  recA Streptococcus mutans UA159

60.615

97.305

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.764

96.407

0.557

Multiple sequence alignment