Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E5Z56_RS03485 Genome accession   NZ_CP039381
Coordinates   723861..725000 (-) Length   379 a.a.
NCBI ID   WP_138156544.1    Uniprot ID   A0A4V1G4Z8
Organism   Ruminococcus bovis strain JE7A12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 718861..730000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Z56_RS03460 (E5Z56_03460) epsC 719824..720453 (-) 630 WP_138156539.1 serine O-acetyltransferase EpsC -
  E5Z56_RS03465 (E5Z56_03465) - 720828..721295 (-) 468 WP_138156540.1 hypothetical protein -
  E5Z56_RS03470 (E5Z56_03470) pgsA 721322..721909 (-) 588 WP_138156541.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  E5Z56_RS03475 (E5Z56_03475) rimO 721923..723251 (-) 1329 WP_138156542.1 30S ribosomal protein S12 methylthiotransferase RimO -
  E5Z56_RS03480 (E5Z56_03480) - 723241..723861 (-) 621 WP_138156543.1 regulatory protein RecX -
  E5Z56_RS03485 (E5Z56_03485) recA 723861..725000 (-) 1140 WP_138156544.1 recombinase RecA Machinery gene
  E5Z56_RS03490 (E5Z56_03490) prmC 725104..725931 (-) 828 WP_138156545.1 peptide chain release factor N(5)-glutamine methyltransferase -
  E5Z56_RS03495 (E5Z56_03495) - 725928..726896 (-) 969 WP_138156546.1 DUF1385 domain-containing protein -
  E5Z56_RS03500 (E5Z56_03500) - 726896..728341 (-) 1446 WP_232842477.1 cell wall metabolism sensor histidine kinase WalK -
  E5Z56_RS03505 (E5Z56_03505) - 728365..729066 (-) 702 WP_022504870.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40730.01 Da        Isoelectric Point: 6.7687

>NTDB_id=358385 E5Z56_RS03485 WP_138156544.1 723861..725000(-) (recA) [Ruminococcus bovis strain JE7A12]
MAVDKNKALQTALSQIEKQFGKGAVMRLGQNEHMSVGHVSTGSLGLDIALGIGGLPRGRIIEIYGPESSGKTTLSLHCIA
EGQKDGGNVAFIDVEHALDPVYAEALGVDIDNLLVAQPDTGEDALEIAEALIRSGAIDVLVVDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKLAGAINKSNCVAIFINQLREKVGVVYGNPEVTPGGRALKFYSSVRLEVRKAEAIKVNGEVIGNR
TKVKVVKNKIAPPFKEAYFDIMYGKGISRIGELIDLAVDTDVINKAGAWFSYGETRLGQGRDKVKMLLEENEELAKEIEE
KVLANIDHLRETKKMKKGAKVPEITPNIPSPAEKKTAKKEPAKKAPAKADAKLDILVED

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=358385 E5Z56_RS03485 WP_138156544.1 723861..725000(-) (recA) [Ruminococcus bovis strain JE7A12]
ATGGCAGTAGATAAGAATAAAGCGCTACAGACAGCTCTTAGTCAGATAGAAAAACAATTTGGTAAAGGTGCAGTAATGCG
TCTTGGACAGAACGAACATATGAGTGTAGGTCATGTTAGTACAGGTTCTTTGGGACTTGATATTGCTTTAGGTATCGGTG
GCTTACCTCGTGGCAGAATTATTGAAATTTACGGACCTGAATCATCAGGTAAAACAACACTATCACTTCACTGTATTGCC
GAAGGTCAAAAAGACGGTGGCAATGTTGCATTTATTGATGTTGAACATGCTCTTGATCCGGTATATGCAGAGGCTCTTGG
TGTTGATATTGATAACCTTCTTGTTGCTCAGCCTGATACAGGTGAAGATGCTCTGGAAATTGCAGAGGCTCTTATTCGTT
CAGGTGCTATTGATGTACTTGTAGTTGACTCAGTAGCAGCACTTGTACCAAAGGCTGAAATTGAGGGTGAAATGGGTGAC
TCCCATGTTGGTCTACAAGCAAGACTGATGTCACAAGCACTTAGAAAACTTGCCGGTGCTATTAATAAAAGTAACTGTGT
TGCAATTTTCATAAATCAGCTTAGAGAAAAAGTTGGTGTTGTTTACGGTAATCCGGAGGTTACACCGGGTGGTAGAGCAT
TAAAGTTCTATTCTTCCGTAAGACTTGAAGTTAGAAAAGCTGAGGCTATTAAGGTTAACGGTGAAGTTATCGGTAACCGT
ACTAAGGTTAAGGTTGTAAAGAACAAGATTGCACCTCCATTTAAAGAGGCTTATTTCGACATTATGTACGGTAAAGGTAT
CTCTAGAATCGGTGAACTTATTGACCTTGCAGTTGATACTGATGTTATCAACAAGGCCGGTGCTTGGTTTAGTTATGGTG
AAACAAGACTTGGCCAAGGTAGAGATAAGGTTAAGATGTTACTTGAAGAAAATGAAGAATTGGCTAAGGAAATTGAAGAA
AAGGTACTTGCTAATATTGACCACCTAAGAGAAACTAAGAAAATGAAAAAGGGTGCTAAAGTACCTGAGATTACACCGAA
TATTCCTTCACCTGCTGAGAAGAAAACAGCTAAGAAAGAACCTGCAAAGAAAGCACCGGCTAAGGCTGATGCAAAGCTTG
ATATTTTGGTTGAAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V1G4Z8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

68.652

84.169

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

66.769

85.752

0.573
  recA Acinetobacter baumannii D1279779

67.391

84.96

0.573
  recA Acinetobacter baylyi ADP1

67.398

84.169

0.567
  recA Streptococcus pyogenes NZ131

65.015

85.224

0.554
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.907

84.96

0.551
  recA Vibrio cholerae strain A1552

64.907

84.96

0.551
  recA Streptococcus mitis NCTC 12261

60.933

90.501

0.551
  recA Streptococcus mutans UA159

64.396

85.224

0.549
  recA Neisseria gonorrhoeae MS11

63.385

85.752

0.544
  recA Neisseria gonorrhoeae MS11

63.385

85.752

0.544
  recA Neisseria gonorrhoeae strain FA1090

63.385

85.752

0.544
  recA Helicobacter pylori strain NCTC11637

63.58

85.488

0.544
  recA Helicobacter pylori 26695

63.272

85.488

0.541
  recA Ralstonia pseudosolanacearum GMI1000

66.775

81.003

0.541
  recA Streptococcus mitis SK321

62.883

86.016

0.541
  recA Streptococcus pneumoniae Rx1

62.883

86.016

0.541
  recA Streptococcus pneumoniae D39

62.883

86.016

0.541
  recA Streptococcus pneumoniae R6

62.883

86.016

0.541
  recA Streptococcus pneumoniae TIGR4

62.883

86.016

0.541
  recA Pseudomonas stutzeri DSM 10701

62.577

86.016

0.538
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.158

85.224

0.538
  recA Glaesserella parasuis strain SC1401

64.151

83.905

0.538
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.195

86.544

0.538
  recA Lactococcus lactis subsp. cremoris KW2

62.769

85.752

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.35

86.016

0.528

Multiple sequence alignment