Detailed information NTG0358306

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: PSL001_RS09920
• Genome accession: NZ_CP039378
• Coordinates: 1728403..1728738 (+)
• Length: 111 a.a.
• NCBI ID: WP_267903735.1
• Uniprot ID: -
• Organism: Pediococcus pentosaceus strain SL001
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1723403..1733738

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSL001_RS08785 (PSL001_08785)	-	1723754..1725868 (+)	2115	WP_060743670.1	ATP-dependent Clp protease ATP-binding subunit	-
PSL001_RS08790 (PSL001_08790)	ylqF	1726219..1727082 (+)	864	WP_060743671.1	ribosome biogenesis GTPase YlqF	-
PSL001_RS08795 (PSL001_08795)	-	1727069..1727836 (+)	768	WP_011673380.1	ribonuclease HII	-
PSL001_RS09915	-	1727877..1728416 (+)	540	WP_267903724.1	DNA-processing protein DprA	-
PSL001_RS09920	dprA	1728403..1728738 (+)	336	WP_267903735.1	DNA-processing protein DprA	Machinery gene
PSL001_RS08805 (PSL001_08805)	-	1728836..1729789 (+)	954	WP_060743673.1	LacI family DNA-binding transcriptional regulator	-
PSL001_RS08810 (PSL001_08810)	-	1729934..1731277 (+)	1344	WP_023440372.1	SLC45 family MFS transporter	-
PSL001_RS08815 (PSL001_08815)	-	1731303..1733555 (+)	2253	WP_146419651.1	glycoside hydrolase family 65 protein	-

Sequence

Protein

• Length: 111 a.a.
• Molecular weight: 12064.76 Da
• Isoelectric Point: 7.1653

>NTDB_id=358306 PSL001_RS09920 WP_267903735.1 1728403..1728738(+) (dprA) [Pediococcus pentosaceus strain SL001]
MTYPKQNAQLQNQIQKEGLILSEYPQGARPLRHHFVERNRIIAGLTTATCVVEARKNSGSLITASLALTENRNVLAIPGS
IFSGNSQGTNQLIAAGARPLIELDDVLEEVL

Nucleotide

• Length: 336 bp

>NTDB_id=358306 PSL001_RS09920 WP_267903735.1 1728403..1728738(+) (dprA) [Pediococcus pentosaceus strain SL001]
ATTACCTACCCTAAGCAAAACGCGCAGCTTCAAAACCAAATTCAAAAAGAAGGTTTAATTCTGAGTGAATATCCTCAGGG
AGCTCGACCATTAAGACATCATTTTGTAGAACGTAACCGAATTATTGCCGGATTGACCACCGCAACATGCGTAGTAGAAG
CAAGAAAGAATTCTGGGAGCTTAATCACGGCTAGTCTGGCACTCACGGAAAATCGAAATGTTTTAGCAATTCCGGGGAGT
ATTTTCAGTGGTAATAGTCAAGGAACCAACCAGTTAATTGCAGCTGGTGCTCGGCCATTAATCGAATTGGATGACGTTCT
AGAAGAAGTTTTGTAA

Domains

Predicted by InterproScan.

• DNA recombination-mediator protein A (DNA_processg_A) (2-100)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Latilactobacillus sakei subsp. sakei 23K	55.046	98.198	0.541
dprA	Lactococcus lactis subsp. cremoris KW2	50.45	100	0.505
dprA/cilB/dalA	Streptococcus pneumoniae Rx1	51.402	96.396	0.495
dprA/cilB/dalA	Streptococcus pneumoniae D39	51.402	96.396	0.495
dprA/cilB/dalA	Streptococcus pneumoniae R6	51.402	96.396	0.495
dprA/cilB/dalA	Streptococcus mitis NCTC 12261	51.402	96.396	0.495
dprA/cilB/dalA	Streptococcus pneumoniae TIGR4	51.402	96.396	0.495
dprA/cilB/dalA	Streptococcus mitis SK321	51.402	96.396	0.495
dprA	Neisseria meningitidis strain C311	49.533	96.396	0.477
dprA	Neisseria meningitidis MC58	49.533	96.396	0.477
dprA	Neisseria gonorrhoeae MS11	49.074	97.297	0.477
dprA	Neisseria gonorrhoeae strain FA1090	49.074	97.297	0.477
dprA	Streptococcus mutans UA159	48.148	97.297	0.468
dprA	Legionella pneumophila strain ERS1305867	47.222	97.297	0.459
dprA	Acinetobacter baumannii strain A118	44.545	99.099	0.441
dprA	Haemophilus influenzae Rd KW20	44.86	96.396	0.432
dprA	Acinetobacter baumannii D1279779	43.636	99.099	0.432
dprA	Thermus thermophilus HB27	44.762	94.595	0.423
dprA	Vibrio cholerae strain A1552	48.958	86.486	0.423
dprA	Acinetobacter baylyi ADP1	42.342	100	0.423
dprA	Bacillus subtilis subsp. subtilis str. 168	42.593	97.297	0.414
dprA	Vibrio campbellii strain DS40M4	42.202	98.198	0.414
dprA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.667	97.297	0.405
dprA	Glaesserella parasuis strain SC1401	40.909	99.099	0.405
dprA	Staphylococcus aureus N315	41.121	96.396	0.396
dprA	Staphylococcus aureus MW2	41.121	96.396	0.396