Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CB0101_RS10645 Genome accession   NZ_CP039373
Coordinates   1994161..1995288 (-) Length   375 a.a.
NCBI ID   WP_010311686.1    Uniprot ID   A0A4P7ZVP2
Organism   Synechococcus sp. CB0101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1989161..2000288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CB0101_RS10620 (CB0101_10605) crtD 1989455..1990957 (+) 1503 WP_010311696.1 C-3',4' desaturase CrtD -
  CB0101_RS10625 (CB0101_10610) - 1990954..1991844 (-) 891 WP_050778812.1 prephenate/arogenate dehydrogenase -
  CB0101_RS10630 (CB0101_10615) - 1991886..1993319 (+) 1434 WP_010311693.1 helicase -
  CB0101_RS10635 (CB0101_10620) - 1993356..1993601 (+) 246 WP_010311691.1 DUF2839 domain-containing protein -
  CB0101_RS10640 (CB0101_10625) - 1993716..1994054 (+) 339 WP_010311689.1 DUF1815 family protein -
  CB0101_RS10645 (CB0101_10630) recA 1994161..1995288 (-) 1128 WP_010311686.1 recombinase RecA Machinery gene
  CB0101_RS10650 (CB0101_10635) - 1995445..1996197 (-) 753 WP_010311684.1 HAD family hydrolase -
  CB0101_RS10660 (CB0101_10645) - 1996395..1998065 (-) 1671 WP_010311682.1 AAA family ATPase -
  CB0101_RS10665 (CB0101_10650) - 1998121..1999170 (-) 1050 WP_010311679.1 LdpA C-terminal domain-containing domain -
  CB0101_RS10670 (CB0101_10655) ndhN 1999167..1999634 (-) 468 WP_010311677.1 NAD(P)H-quinone oxidoreductase subunit N -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 39792.17 Da        Isoelectric Point: 5.5942

>NTDB_id=358244 CB0101_RS10645 WP_010311686.1 1994161..1995288(-) (recA) [Synechococcus sp. CB0101]
MPADTKTSSPAAGASNTNPERDKALGLVLNQIERNFGKGSIMRLGDASRMRIETSPTGALTLDLALGGGYPKGRVVEIYG
PESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAAALGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSV
AALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIR
RIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTVGCLLDLAEENGVVVRKGAWYSYEGDNIGQGRDNTI
TWLEQNPEPKEQIERQVREKLSETSDSLKPVAAAAARLAASGAAASSEEAVPAAS

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=358244 CB0101_RS10645 WP_010311686.1 1994161..1995288(-) (recA) [Synechococcus sp. CB0101]
ATGCCAGCCGACACCAAAACCAGCAGCCCCGCCGCTGGCGCCTCCAACACCAACCCCGAGCGCGATAAGGCCCTGGGCCT
GGTGCTCAACCAGATCGAACGCAACTTCGGCAAGGGCTCGATCATGCGCCTGGGGGATGCCTCGCGCATGCGGATCGAAA
CCAGCCCCACCGGCGCCCTCACCCTCGACCTGGCCCTGGGCGGCGGCTACCCCAAGGGCCGTGTGGTGGAGATCTACGGC
CCGGAGAGCTCCGGTAAAACCACCCTCACCCTGCACGCCATCGCCGAGGTGCAGCGCCGCGGTGGCGTGGCCGCCTTCGT
CGACGCTGAGCACGCCCTGGATCCGGTGTACGCCGCCGCCCTGGGGGTCGATATCGAGAACCTGCTGGTCTCCCAGCCGG
ATACCGGCGAAATGGCGCTGGAGATCGTGGACCAACTGGTGCGCTCCGCCGCCGTCGACATCGTGGTGGTCGACTCGGTG
GCCGCCCTCACCCCGCGCGCTGAGATCGAAGGCGAAATGGGTGATCTGGCGGTGGGCAGCCAGGCGCGTTTGATGAGCCA
GGCGATGCGCAAGATCACCGGCAATATCGGCAAATCCGGCTGCACCGTGATCTTCCTCAACCAGCTGCGCCAAAAGATCG
GCGTGACCTACGGCAACCCGGAAACCACCACCGGCGGCAATGCCTTGAAGTTCTATGCGTCGGTGCGCCTCGACATCCGC
CGCATCCAGACCCTCAAGCGCGGCACCGAGGAATACGGCATCCGCGCCAAGGTAAAGGTGGCCAAAAACAAGGTGGCCCC
GCCCTTCCGCATCGCTGAGTTCGACATCCTGTTCGGCCGCGGCATCAGCACCGTGGGCTGCCTGCTGGATCTCGCTGAAG
AGAACGGCGTGGTGGTGCGCAAAGGCGCCTGGTACAGCTACGAGGGCGACAACATCGGCCAGGGCCGCGACAACACGATC
ACCTGGCTCGAGCAAAACCCTGAGCCGAAGGAACAGATCGAGCGCCAGGTGCGCGAGAAGCTGAGCGAAACCAGCGACTC
GCTCAAACCCGTGGCCGCCGCCGCCGCTCGCCTGGCCGCCAGTGGCGCCGCTGCCAGCAGCGAGGAAGCTGTGCCAGCCG
CCAGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7ZVP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

63.314

90.133

0.571
  recA Glaesserella parasuis strain SC1401

57.143

98.933

0.565
  recA Acinetobacter baylyi ADP1

65.217

85.867

0.56
  recA Acinetobacter baumannii D1279779

64.308

86.667

0.557
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.249

92.267

0.547
  recA Ralstonia pseudosolanacearum GMI1000

64.331

83.733

0.539
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

85.6

0.536
  recA Vibrio cholerae strain A1552

62.112

85.867

0.533
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

85.867

0.533
  recA Neisseria gonorrhoeae strain FA1090

62.903

82.667

0.52
  recA Neisseria gonorrhoeae MS11

62.903

82.667

0.52
  recA Neisseria gonorrhoeae MS11

62.903

82.667

0.52
  recA Helicobacter pylori strain NCTC11637

59.509

86.933

0.517
  recA Helicobacter pylori 26695

59.509

86.933

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.202

86.933

0.515
  recA Streptococcus pneumoniae Rx1

57.927

87.467

0.507
  recA Streptococcus pneumoniae D39

57.927

87.467

0.507
  recA Streptococcus pneumoniae R6

57.927

87.467

0.507
  recA Streptococcus pneumoniae TIGR4

57.927

87.467

0.507
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

85.333

0.507
  recA Streptococcus mitis NCTC 12261

58.025

86.4

0.501
  recA Streptococcus mitis SK321

58.025

86.4

0.501
  recA Streptococcus mutans UA159

57.846

86.667

0.501
  recA Lactococcus lactis subsp. cremoris KW2

57.099

86.4

0.493
  recA Streptococcus pyogenes NZ131

56.269

87.2

0.491
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.925

89.333

0.491

Multiple sequence alignment