Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | E6B08_RS24095 | Genome accession | NZ_CP039371 |
| Coordinates | 5166490..5167557 (-) | Length | 355 a.a. |
| NCBI ID | WP_136916255.1 | Uniprot ID | A0A4D6XCP5 |
| Organism | Pseudomonas putida strain 1290 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 5160753..5189556 | 5166490..5167557 | within | 0 |
Gene organization within MGE regions
Location: 5160753..5189556
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E6B08_RS24055 (E6B08_24055) | finR | 5160753..5161679 (+) | 927 | WP_136916247.1 | LysR family transcriptional regulator FinR | - |
| E6B08_RS24060 (E6B08_24060) | - | 5161676..5162038 (-) | 363 | WP_136916248.1 | diacylglycerol kinase | - |
| E6B08_RS24065 (E6B08_24065) | erdR | 5162114..5162764 (-) | 651 | WP_136916249.1 | response regulator transcription factor ErdR | - |
| E6B08_RS24070 (E6B08_24070) | - | 5162947..5163657 (-) | 711 | WP_136916250.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| E6B08_RS24075 (E6B08_24075) | - | 5163879..5164298 (+) | 420 | WP_136916251.1 | quorum-sensing-regulated virulence factor family protein | - |
| E6B08_RS24080 (E6B08_24080) | - | 5164299..5164502 (-) | 204 | WP_136916252.1 | hypothetical protein | - |
| E6B08_RS24085 (E6B08_24085) | - | 5164783..5165901 (+) | 1119 | WP_136916253.1 | LOG family protein | - |
| E6B08_RS24090 (E6B08_24090) | recX | 5166010..5166480 (-) | 471 | WP_136916254.1 | recombination regulator RecX | - |
| E6B08_RS24095 (E6B08_24095) | recA | 5166490..5167557 (-) | 1068 | WP_136916255.1 | recombinase RecA | Machinery gene |
| E6B08_RS24100 (E6B08_24100) | - | 5167661..5168143 (-) | 483 | WP_136916256.1 | CinA family protein | - |
| E6B08_RS24105 (E6B08_24105) | - | 5168900..5169163 (+) | 264 | WP_136916257.1 | hypothetical protein | - |
| E6B08_RS24110 (E6B08_24110) | - | 5169160..5169411 (+) | 252 | WP_136916258.1 | DUF3077 domain-containing protein | - |
| E6B08_RS24115 (E6B08_24115) | - | 5169543..5170028 (-) | 486 | WP_238349368.1 | lysis system i-spanin subunit Rz | - |
| E6B08_RS24120 (E6B08_24120) | - | 5170025..5170573 (-) | 549 | WP_136916259.1 | glycoside hydrolase family 19 protein | - |
| E6B08_RS24125 (E6B08_24125) | - | 5170604..5171620 (-) | 1017 | WP_136916260.1 | phage late control D family protein | - |
| E6B08_RS24130 (E6B08_24130) | - | 5171648..5171854 (-) | 207 | WP_136916261.1 | tail protein X | - |
| E6B08_RS24135 (E6B08_24135) | - | 5171829..5172674 (-) | 846 | WP_136916262.1 | phage tail protein | - |
| E6B08_RS24140 (E6B08_24140) | - | 5172684..5174630 (-) | 1947 | WP_136916263.1 | hypothetical protein | - |
| E6B08_RS24145 (E6B08_24145) | - | 5174756..5175058 (-) | 303 | WP_136916264.1 | phage tail assembly protein | - |
| E6B08_RS24150 (E6B08_24150) | - | 5175070..5175579 (-) | 510 | WP_133325952.1 | phage major tail tube protein | - |
| E6B08_RS24155 (E6B08_24155) | - | 5175593..5176759 (-) | 1167 | WP_136916265.1 | phage tail sheath family protein | - |
| E6B08_RS24160 (E6B08_24160) | - | 5176844..5177278 (-) | 435 | WP_136916266.1 | phage tail assembly chaperone | - |
| E6B08_RS31400 (E6B08_24165) | - | 5177290..5178576 (-) | 1287 | WP_136916267.1 | phage tail protein | - |
| E6B08_RS24170 (E6B08_24170) | - | 5178569..5179177 (-) | 609 | WP_136916268.1 | phage tail protein I | - |
| E6B08_RS24175 (E6B08_24175) | - | 5179174..5180061 (-) | 888 | WP_136916269.1 | baseplate assembly protein | - |
| E6B08_RS24180 (E6B08_24180) | - | 5180058..5180384 (-) | 327 | WP_136916270.1 | GPW/gp25 family protein | - |
| E6B08_RS24185 (E6B08_24185) | - | 5180428..5180988 (-) | 561 | WP_136916271.1 | phage baseplate assembly protein V | - |
| E6B08_RS24190 (E6B08_24190) | - | 5180985..5181482 (-) | 498 | WP_136916272.1 | hypothetical protein | - |
| E6B08_RS24195 (E6B08_24195) | - | 5181479..5181832 (-) | 354 | WP_136916273.1 | phage holin family protein | - |
| E6B08_RS24200 (E6B08_24200) | - | 5182292..5183029 (-) | 738 | WP_136916274.1 | LexA family transcriptional regulator | - |
| E6B08_RS24205 (E6B08_24205) | mutS | 5183176..5185749 (+) | 2574 | WP_136916275.1 | DNA mismatch repair protein MutS | - |
| E6B08_RS24210 (E6B08_24210) | fdxA | 5185890..5186213 (+) | 324 | WP_136916276.1 | ferredoxin FdxA | - |
| E6B08_RS24215 (E6B08_24215) | rpoS | 5186712..5187719 (-) | 1008 | WP_016392283.1 | RNA polymerase sigma factor RpoS | - |
| E6B08_RS24220 (E6B08_24220) | - | 5187828..5188691 (-) | 864 | WP_136916277.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| E6B08_RS24225 (E6B08_24225) | - | 5188879..5189517 (-) | 639 | WP_192938702.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 37542.81 Da Isoelectric Point: 5.5300
>NTDB_id=358225 E6B08_RS24095 WP_136916255.1 5166490..5167557(-) (recA) [Pseudomonas putida strain 1290]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERTSIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVAQGLVEKSGAWYSYQGNKIGQGKANAAKYLQENPAIGNEIEK
QIRDKLLNAGAVAAAGKAAAADANADDVADADAGY
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERTSIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVAQGLVEKSGAWYSYQGNKIGQGKANAAKYLQENPAIGNEIEK
QIRDKLLNAGAVAAAGKAAAADANADDVADADAGY
Nucleotide
Download Length: 1068 bp
>NTDB_id=358225 E6B08_RS24095 WP_136916255.1 5166490..5167557(-) (recA) [Pseudomonas putida strain 1290]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAAATCGAACGCCAATTCGGCAAAGGCGCGGTCATGCG
CATGGGTGACCATGAGCGCACTTCCATCCCGGCCATCTCCACCGGCTCCCTGGGCCTGGACATCGCCCTGGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTCGAAATCTACGGCCCGGAGTCGTCGGGTAAAACCACGCTGACCCTGTCGGTCATCGCC
GAAGCCCAGAAAAACGGCGCCACCTGCGCCTTCGTCGACGCCGAGCACGCCCTCGACCCCGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTAATCATCGTCGACTCCGTTGCCGCCCTGGTACCCAAGGCCGAGATCGAAGGCGAGATGGGCGAC
ATGCACGTGGGCCTGCAGGCTCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGTGTCATGTTCGGCAGCCCGGAGACCACCACCGGCGGTAACGCCC
TGAAGTTCTACGCCTCGGTGCGTCTGGACATCCGTCGTACCGGTGCGGTCAAGGAAGGTGACGAGGTGGTCGGTAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTCTCGCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTGTACGGCAAGGGTAT
CTACCGCAACGGCGAAATCATCGACCTGGGTGTTGCCCAGGGCTTGGTGGAAAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGCCAGGGCAAGGCCAACGCCGCCAAGTACCTGCAAGAAAACCCAGCCATCGGCAACGAGATCGAGAAG
CAGATCCGTGACAAGCTGCTCAACGCTGGTGCCGTTGCCGCCGCTGGCAAGGCTGCTGCCGCCGATGCCAACGCTGACGA
TGTAGCCGACGCCGACGCTGGCTACTGA
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAAATCGAACGCCAATTCGGCAAAGGCGCGGTCATGCG
CATGGGTGACCATGAGCGCACTTCCATCCCGGCCATCTCCACCGGCTCCCTGGGCCTGGACATCGCCCTGGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTCGAAATCTACGGCCCGGAGTCGTCGGGTAAAACCACGCTGACCCTGTCGGTCATCGCC
GAAGCCCAGAAAAACGGCGCCACCTGCGCCTTCGTCGACGCCGAGCACGCCCTCGACCCCGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTAATCATCGTCGACTCCGTTGCCGCCCTGGTACCCAAGGCCGAGATCGAAGGCGAGATGGGCGAC
ATGCACGTGGGCCTGCAGGCTCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGTGTCATGTTCGGCAGCCCGGAGACCACCACCGGCGGTAACGCCC
TGAAGTTCTACGCCTCGGTGCGTCTGGACATCCGTCGTACCGGTGCGGTCAAGGAAGGTGACGAGGTGGTCGGTAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTCTCGCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTGTACGGCAAGGGTAT
CTACCGCAACGGCGAAATCATCGACCTGGGTGTTGCCCAGGGCTTGGTGGAAAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGCCAGGGCAAGGCCAACGCCGCCAAGTACCTGCAAGAAAACCCAGCCATCGGCAACGAGATCGAGAAG
CAGATCCGTGACAAGCTGCTCAACGCTGGTGCCGTTGCCGCCGCTGGCAAGGCTGCTGCCGCCGATGCCAACGCTGACGA
TGTAGCCGACGCCGACGCTGGCTACTGA
Similar proteins
Only experimentally validated proteins are listed.