Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E6A54_RS06665 Genome accession   NZ_CP039261
Coordinates   1383010..1384101 (-) Length   363 a.a.
NCBI ID   WP_087283951.1    Uniprot ID   -
Organism   Lactobacillus johnsonii strain DC22.2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1378010..1389101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6A54_RS06645 (E6A54_06680) - 1378024..1379211 (-) 1188 WP_158172473.1 DEAD/DEAH box helicase family protein -
  E6A54_RS06650 (E6A54_06685) - 1379334..1379999 (+) 666 WP_012846456.1 YigZ family protein -
  E6A54_RS06655 (E6A54_06690) - 1380017..1381159 (-) 1143 WP_012846457.1 glycosyltransferase family 4 protein -
  E6A54_RS06660 (E6A54_06695) rny 1381261..1382883 (-) 1623 WP_012846458.1 ribonuclease Y -
  E6A54_RS06665 (E6A54_06700) recA 1383010..1384101 (-) 1092 WP_087283951.1 recombinase RecA Machinery gene
  E6A54_RS06670 (E6A54_06705) pgsA 1384264..1384827 (-) 564 WP_004893865.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  E6A54_RS06675 (E6A54_06710) - 1384827..1385876 (-) 1050 WP_087283948.1 helix-turn-helix domain-containing protein -
  E6A54_RS06680 (E6A54_06715) ymfI 1385935..1386663 (-) 729 WP_087283945.1 elongation factor P 5-aminopentanone reductase -
  E6A54_RS06685 (E6A54_06720) - 1386664..1387899 (-) 1236 WP_158172474.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 39345.86 Da        Isoelectric Point: 5.6327

>NTDB_id=357705 E6A54_RS06665 WP_087283951.1 1383010..1384101(-) (recA) [Lactobacillus johnsonii strain DC22.2]
MAKDDKKKALDIALKKIEKDFGKGAVMRMGEKVDTQISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMG
DSHVGLQARLMSQALRKLSGNISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGN
RVKLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGRENAKQYLEEHPDVYEEVK
EKVREAYGIDAKAIEERENPEKVKQDKEVPVNKDASDEKSEKK

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=357705 E6A54_RS06665 WP_087283951.1 1383010..1384101(-) (recA) [Lactobacillus johnsonii strain DC22.2]
TTGGCTAAAGATGATAAAAAGAAGGCTTTAGACATTGCCTTAAAAAAGATTGAAAAAGACTTTGGAAAAGGCGCAGTGAT
GCGCATGGGTGAAAAAGTAGACACTCAAATTTCCACTATTCCTTCCGGTTCACTAGCTTTAGATGCAGCTCTTGGAGTTG
GTGGCTATCCTCGTGGACGAATTATTGAAGTATATGGACCAGAAAGTTCTGGTAAAACAACTGTGGCTCTTCATGCTGTT
GCAGAAGTTCAGAAGCGTGGAGGAACGGCAGCTTATATCGATGCGGAAAATGCGATGGATCCTGCTTATGCCGAAGCATT
AGGTGTTGATATTGATTCCTTAATTTTATCTCAACCAAACACTGGTGAAGAAGGTTTGCAAATTGCAGATACGCTTATTG
CGAGTGGTGCAATTGATATCTTGGTTGTGGATTCCGTGGCTGCGTTAGTACCAAGAGCCGAAATTGACGGTGACATGGGA
GATTCACATGTTGGTTTGCAAGCCAGATTAATGAGTCAGGCTTTACGTAAACTCTCAGGAAATATCTCTAAAACTAAAAC
TATTGCTATTTTCATTAACCAAATTCGTGAAAAAGTTGGAGTTATGTTTGGAAATCCAGAAACTACTCCTGGTGGACGTG
CTTTGAAGTTTTACTCTACGATTAGATTAGAAGTACGTAGAGCAGAACAAATTAAACAAGGATCAGACGTAATTGGTAAC
CGAGTTAAATTAAAGGTTGTAAAAAATAAAGTTGCTCCTCCATTTAAAGTGGCAGAAGTCGATATCATGTATGGGAAAGG
TATTTCTCAAACTGGTGAGTTAATTGATATGGCTGCTGATAAAGATATCATTAAGAAAGCTGGCTCGTGGTATTCATATG
GGGATGATCGCATTGGACAAGGCCGCGAGAATGCTAAGCAATATCTAGAAGAGCATCCTGATGTTTACGAAGAAGTAAAA
GAAAAAGTTCGTGAAGCTTATGGAATTGATGCTAAAGCAATTGAAGAACGGGAAAATCCTGAAAAGGTAAAACAAGACAA
GGAAGTACCAGTAAACAAAGATGCTTCCGATGAAAAAAGTGAAAAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

76.602

98.898

0.758
  recA Bacillus subtilis subsp. subtilis str. 168

73.333

90.909

0.667
  recA Streptococcus mutans UA159

65.84

100

0.658
  recA Streptococcus pneumoniae R6

65.556

99.174

0.65
  recA Streptococcus pneumoniae TIGR4

65.556

99.174

0.65
  recA Streptococcus pneumoniae Rx1

65.556

99.174

0.65
  recA Streptococcus pneumoniae D39

65.556

99.174

0.65
  recA Streptococcus pyogenes NZ131

70.517

90.634

0.639
  recA Streptococcus mitis NCTC 12261

66.859

95.592

0.639
  recA Streptococcus mitis SK321

68.997

90.634

0.625
  recA Lactococcus lactis subsp. cremoris KW2

67.477

90.634

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.415

90.358

0.573
  recA Neisseria gonorrhoeae strain FA1090

60.961

91.736

0.559
  recA Neisseria gonorrhoeae MS11

60.961

91.736

0.559
  recA Neisseria gonorrhoeae MS11

60.961

91.736

0.559
  recA Acinetobacter baumannii D1279779

57.895

94.215

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.372

88.981

0.537
  recA Pseudomonas stutzeri DSM 10701

54.52

97.521

0.532
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.359

90.634

0.529
  recA Helicobacter pylori 26695

58.896

89.807

0.529
  recA Helicobacter pylori strain NCTC11637

58.896

89.807

0.529
  recA Acinetobacter baylyi ADP1

59.627

88.705

0.529
  recA Vibrio cholerae strain A1552

57.143

88.705

0.507
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.143

88.705

0.507
  recA Ralstonia pseudosolanacearum GMI1000

58.466

86.226

0.504
  recA Glaesserella parasuis strain SC1401

54.683

91.185

0.499

Multiple sequence alignment