Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E5790_RS01660 Genome accession   NZ_CP039255
Coordinates   349683..350720 (-) Length   345 a.a.
NCBI ID   WP_005412937.1    Uniprot ID   A0AA42HVY2
Organism   Stenotrophomonas sp. PAMC25021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 344683..355720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5790_RS01645 (E5790_01645) csrA 345972..346175 (-) 204 WP_004152909.1 carbon storage regulator CsrA -
  E5790_RS01650 (E5790_01650) alaS 346323..348971 (-) 2649 WP_014646721.1 alanine--tRNA ligase -
  E5790_RS01655 (E5790_01655) recX 349081..349572 (-) 492 WP_005409024.1 recombination regulator RecX -
  E5790_RS01660 (E5790_01660) recA 349683..350720 (-) 1038 WP_005412937.1 recombinase RecA Machinery gene
  E5790_RS01665 (E5790_01665) lexA 350925..351560 (-) 636 WP_032962190.1 transcriptional repressor LexA -
  E5790_RS01670 (E5790_01670) ubiB 351783..353465 (-) 1683 WP_032962195.1 2-polyprenylphenol 6-hydroxylase -
  E5790_RS01675 (E5790_01675) - 353500..353994 (-) 495 WP_005409020.1 nicotinamide-nucleotide amidohydrolase family protein -
  E5790_RS01680 (E5790_01680) hflX 354114..355424 (-) 1311 WP_032962191.1 ribosome rescue GTPase HflX -
  E5790_RS01685 (E5790_01685) hfq 355439..355714 (-) 276 WP_004152891.1 RNA chaperone Hfq -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37164.66 Da        Isoelectric Point: 4.7699

>NTDB_id=357662 E5790_RS01660 WP_005412937.1 349683..350720(-) (recA) [Stenotrophomonas sp. PAMC25021]
MDENKKRALAAALGQIEKQFGKGSVMRMGDRVVEPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKMGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVDAKLVEKAGAWYSYGEERIGQGKDNARGYLRDNPTVAAKL
EAELREKFQPAEAAREEGDDEGEDE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=357662 E5790_RS01660 WP_005412937.1 349683..350720(-) (recA) [Stenotrophomonas sp. PAMC25021]
ATGGACGAGAACAAGAAGCGCGCCCTCGCTGCAGCTCTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGCGTGGTCGAGCCCGTCGAAGCCATCCCGACCGGTTCGCTGATGCTCGACATCGCGCTGGGCATTGGTG
GTCTGCCAAAGGGCCGTGTCGTTGAGATCTACGGGCCGGAATCCTCGGGCAAGACCACCTTGACCCTGCAGGCCATCGCC
GAATGCCAGAAGATGGGCGGCACCGCGGCCTTCATCGACGCCGAGCACGCGCTGGACCCGATCTACGCCGCCAAGCTGGG
CGTGAACGTGGACGACCTGCTGCTGTCGCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTCCGTT
CGGGTTCGGTGGACATCCTGGTGATCGACTCGGTTGCCGCGCTGACCCCGAAGGCCGAAATCGAAGGCGAGATGGGCGAC
CAGCTGCCAGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCTCCAACACCCT
GGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAACCACCACCGGTGGCA
ACGCGCTCAAGTTCTACGCCTCGGTCCGCCTGGACATCCGCCGTATCGGCGCGATCAAGAAGGGTGACGAGATCATCGGT
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGCTGGCACCTCCGTTCAAGCAGGTCATCACCGAAATCCTGTATGGCGA
AGGCATCAGCCGTGAAGGCGAGCTGATCGACATGGGTGTGGATGCCAAGCTGGTGGAGAAGGCTGGCGCCTGGTACAGCT
ACGGTGAAGAACGCATTGGCCAGGGCAAGGACAACGCCCGCGGCTACCTGCGCGACAACCCGACTGTCGCCGCCAAGCTC
GAGGCCGAGCTGCGCGAGAAATTCCAGCCGGCCGAAGCGGCCCGCGAGGAAGGCGACGACGAAGGCGAAGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

70.435

100

0.704
  recA Ralstonia pseudosolanacearum GMI1000

76.997

90.725

0.699
  recA Pseudomonas stutzeri DSM 10701

73.171

95.072

0.696
  recA Acinetobacter baumannii D1279779

72.256

95.072

0.687
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.086

94.493

0.681
  recA Vibrio cholerae strain A1552

72.086

94.493

0.681
  recA Neisseria gonorrhoeae MS11

64.857

100

0.658
  recA Neisseria gonorrhoeae MS11

64.857

100

0.658
  recA Neisseria gonorrhoeae strain FA1090

64.857

100

0.658
  recA Glaesserella parasuis strain SC1401

68.421

93.623

0.641
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.772

96.812

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.628

99.71

0.614
  recA Latilactobacillus sakei subsp. sakei 23K

61.194

97.101

0.594
  recA Helicobacter pylori strain NCTC11637

61.446

96.232

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

62.769

94.203

0.591
  recA Streptococcus mitis SK321

59.475

99.42

0.591
  recA Helicobacter pylori 26695

60.843

96.232

0.586
  recA Streptococcus pneumoniae R6

60.671

95.072

0.577
  recA Streptococcus pneumoniae TIGR4

60.671

95.072

0.577
  recA Streptococcus mitis NCTC 12261

60.671

95.072

0.577
  recA Streptococcus pneumoniae Rx1

60.671

95.072

0.577
  recA Streptococcus pneumoniae D39

60.671

95.072

0.577
  recA Streptococcus mutans UA159

60.303

95.652

0.577
  recA Streptococcus pyogenes NZ131

60.303

95.652

0.577
  recA Lactococcus lactis subsp. cremoris KW2

59.385

94.203

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.879

95.652

0.554

Multiple sequence alignment