Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E5678_RS17965 Genome accession   NZ_CP039252
Coordinates   3925184..3926320 (+) Length   378 a.a.
NCBI ID   WP_136179802.1    Uniprot ID   -
Organism   Hydrogenophaga sp. PAMC20947     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3920184..3931320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5678_RS17945 (E5678_17935) - 3920560..3921915 (+) 1356 WP_136179799.1 aspartate aminotransferase family protein -
  E5678_RS17950 (E5678_17940) - 3922020..3923465 (-) 1446 WP_136180846.1 sensor histidine kinase -
  E5678_RS17955 (E5678_17945) - 3923582..3924256 (-) 675 WP_136179800.1 response regulator transcription factor -
  E5678_RS17960 (E5678_17950) - 3924432..3924950 (-) 519 WP_136179801.1 MarR family winged helix-turn-helix transcriptional regulator -
  E5678_RS17965 (E5678_17955) recA 3925184..3926320 (+) 1137 WP_136179802.1 recombinase RecA Machinery gene
  E5678_RS17970 (E5678_17960) - 3926317..3926556 (+) 240 WP_247596818.1 DUF6500 family protein -
  E5678_RS17975 (E5678_17965) recX 3926629..3927084 (+) 456 WP_136179803.1 recombination regulator RecX -
  E5678_RS17980 (E5678_17970) argC 3927215..3928138 (-) 924 WP_136179804.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  E5678_RS17985 (E5678_17975) sucC 3928338..3929504 (+) 1167 WP_136179805.1 ADP-forming succinate--CoA ligase subunit beta -
  E5678_RS17990 (E5678_17980) sucD 3929533..3930426 (+) 894 WP_136179806.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40437.37 Da        Isoelectric Point: 5.4271

>NTDB_id=357641 E5678_RS17965 WP_136179802.1 3925184..3926320(+) (recA) [Hydrogenophaga sp. PAMC20947]
MDAAVKPNPLNAEKAKALQAALAQIEKQFGKGTIMRLGEGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG
KTTLTLQVIAEMQKLSGQCAFVDAEHALDIQYAQKLGVNLQDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAALTP
KAELEGEMGDSLPGLQARLMSQALRKLTATIKKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTI
KRGDEAIGNETKVKVVKNKVAPPFKTAEFDILFGEGISREGEILDLGAANRVIEKSGAWYAYNGEKIGQGRDNSREFLRE
NPDLRREIENKVRAELGVPLLPVEEAPAGKGAKGAKADKSDKADKADKAEKADKAAAE

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=357641 E5678_RS17965 WP_136179802.1 3925184..3926320(+) (recA) [Hydrogenophaga sp. PAMC20947]
ATGGACGCAGCCGTCAAACCCAATCCCCTCAACGCCGAAAAAGCCAAGGCCCTGCAGGCCGCGCTGGCCCAGATCGAAAA
GCAGTTCGGCAAGGGCACCATCATGCGTCTGGGCGAAGGCGAGGTGATCGAAGATATCCAGGTCGTGTCCACCGGCTCGC
TGGGTCTGGACATCGCCCTGGGCGTCGGCGGCCTGCCGCGCGGCCGGGTGGTCGAGATCTACGGCCCTGAATCTTCGGGC
AAGACCACGCTGACCCTGCAGGTGATTGCCGAAATGCAAAAGCTGAGCGGGCAGTGCGCCTTTGTCGACGCCGAGCACGC
GCTGGACATTCAGTACGCGCAAAAATTGGGCGTGAACCTGCAAGACCTGCTGATCTCCCAGCCCGACACCGGCGAGCAGG
CACTGGAAATCGTCGACAGCCTGGTGCGCTCCGGCGCGGTTGATCTGATCGTGATCGACTCGGTGGCCGCGCTCACGCCC
AAGGCCGAGCTCGAAGGCGAGATGGGCGACTCGCTGCCCGGCTTGCAGGCCCGGTTGATGAGCCAGGCGTTGCGCAAACT
CACCGCCACCATCAAGAAGAGCAATTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGCT
CCCCCGAGACCACCACCGGCGGCAACGCGCTCAAGTTTTACGCTTCTGTGCGCCTGGACATCCGCCGCACCGGCACCATC
AAGAGGGGCGACGAAGCCATCGGCAACGAGACCAAGGTCAAGGTGGTGAAAAACAAGGTTGCGCCGCCCTTCAAGACGGC
CGAGTTCGACATCCTGTTTGGCGAGGGCATCAGCCGTGAAGGCGAAATCCTGGATCTGGGCGCGGCCAACCGCGTGATCG
AAAAATCCGGCGCCTGGTACGCCTACAACGGCGAAAAAATCGGGCAAGGCCGCGACAACTCGCGCGAATTCCTGCGCGAG
AACCCCGATCTGCGCCGTGAGATTGAAAACAAGGTGCGCGCCGAGCTGGGCGTACCGCTCCTGCCGGTGGAAGAAGCGCC
CGCAGGCAAAGGCGCCAAGGGAGCCAAAGCCGACAAGAGCGACAAGGCCGACAAAGCGGACAAGGCTGAAAAGGCCGACA
AAGCAGCAGCCGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.769

89.418

0.722
  recA Glaesserella parasuis strain SC1401

67.039

94.709

0.635
  recA Pseudomonas stutzeri DSM 10701

71.56

86.508

0.619
  recA Neisseria gonorrhoeae MS11

69.851

88.624

0.619
  recA Neisseria gonorrhoeae MS11

69.851

88.624

0.619
  recA Neisseria gonorrhoeae strain FA1090

69.851

88.624

0.619
  recA Acinetobacter baylyi ADP1

70.642

86.508

0.611
  recA Acinetobacter baumannii D1279779

69.725

86.508

0.603
  recA Vibrio cholerae strain A1552

68.182

87.302

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.182

87.302

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.163

87.566

0.579
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.455

87.302

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

63.914

86.508

0.553
  recA Helicobacter pylori 26695

60.704

90.212

0.548
  recA Helicobacter pylori strain NCTC11637

60.704

90.212

0.548
  recA Streptococcus mitis SK321

58.074

93.386

0.542
  recA Streptococcus mutans UA159

57.423

94.444

0.542
  recA Latilactobacillus sakei subsp. sakei 23K

61.194

88.624

0.542
  recA Streptococcus mitis NCTC 12261

57.79

93.386

0.54
  recA Lactococcus lactis subsp. cremoris KW2

61.631

87.566

0.54
  recA Streptococcus pyogenes NZ131

60.79

87.037

0.529
  recA Streptococcus pneumoniae Rx1

59.76

88.095

0.526
  recA Streptococcus pneumoniae D39

59.76

88.095

0.526
  recA Streptococcus pneumoniae R6

59.76

88.095

0.526
  recA Streptococcus pneumoniae TIGR4

59.76

88.095

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.697

87.302

0.521

Multiple sequence alignment