Detailed information NTG0357641

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GR130_RS03340
• Genome accession: NZ_CP047146
• Coordinates: 788795..789796 (+)
• Length: 333 a.a.
• NCBI ID: WP_159503309.1
• Uniprot ID: -
• Organism: Streptomyces sp. GS7
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 783795..794796

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GR130_RS03315 (GR130_03315)	-	784598..785095 (-)	498	WP_159503304.1	MarR family transcriptional regulator	-
GR130_RS03320 (GR130_03320)	-	785276..786043 (+)	768	WP_159503305.1	class III extradiol ring-cleavage dioxygenase	-
GR130_RS03325 (GR130_03325)	-	786065..787114 (-)	1050	WP_159503306.1	questin oxidase family protein	-
GR130_RS03330 (GR130_03330)	-	787344..787904 (-)	561	WP_159503307.1	hypothetical protein	-
GR130_RS03335 (GR130_03335)	-	788078..788596 (-)	519	WP_159503308.1	GNAT family N-acetyltransferase	-
GR130_RS03340 (GR130_03340)	rpoS	788795..789796 (+)	1002	WP_159503309.1	sigma-70 family RNA polymerase sigma factor	Regulator
GR130_RS03345 (GR130_03345)	-	790269..791039 (+)	771	WP_159503310.1	DeoR/GlpR family DNA-binding transcription regulator	-
GR130_RS03350 (GR130_03350)	pfkB	791036..792001 (+)	966	WP_159503311.1	1-phosphofructokinase	-
GR130_RS03355 (GR130_03355)	-	792108..792302 (+)	195	WP_159503312.1	hypothetical protein	-
GR130_RS03360 (GR130_03360)	-	792434..793762 (-)	1329	WP_159503313.1	Ig-like domain-containing protein	-
GR130_RS03365 (GR130_03365)	-	794407..794679 (+)	273	WP_159503314.1	hypothetical protein	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 36633.04 Da
• Isoelectric Point: 4.7970

>NTDB_id=357641 GR130_RS03340 WP_159503309.1 788795..789796(+) (rpoS) [Streptomyces sp. GS7]
MATRAVARSQASTSGSDGATSVRAGGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYARQILDGEVTDGNAA
GADRAELEAMAAEGARAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEVAGELGSTPSRVTDVLDWARDPVSLNMSVDDDGDTQ
FGDLLEDTSAASPEQSVLTLLRSEELEDLIDRLDQRTASIIKARYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLEL
KRMARDTGFDAAA

Nucleotide

• Length: 1002 bp

>NTDB_id=357641 GR130_RS03340 WP_159503309.1 788795..789796(+) (rpoS) [Streptomyces sp. GS7]
ATGGCAACCCGTGCCGTCGCCCGTAGTCAGGCCAGCACCAGTGGATCTGATGGGGCCACCAGCGTTCGCGCCGGAGGCGG
GGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCGCTGCTCGACGCCGCCAAGGAGG
TCGAGCTGTCCCAGACCATCGAGGCGGGTGTCTACGCCCGGCAGATCCTGGACGGCGAGGTCACCGACGGCAACGCCGCA
GGTGCCGACCGGGCGGAGCTGGAGGCGATGGCCGCCGAGGGCGCCCGGGCCAAGGACGTCTTCATCCGGTCCAACCTCCG
GCTGGTCGTCGCCGTCGCCCGCCGCTACCCGCGCGCCGGCCTGCCCCTGCTGGACCTGATCCAGGAGGGCAACGCCGGCC
TGGTCCGCGCCGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCGACGTACGCGACGTGGTGGATCCGCCAGGCC
ATCACCCGCTCCATCGCCGACCAGTCGCGCACGATTCGGCTGCCCGTCCACCTCGTGGAGGAGCTGGGCCGGATCCGCCG
GGTGCAGCGCGAGTTCAACCGCGAGAACGGCCGTGACCCGGAGCCGGCGGAGGTGGCCGGCGAGCTGGGCTCGACGCCCT
CCCGGGTCACCGACGTCCTGGACTGGGCCCGCGACCCGGTCAGCCTGAACATGTCGGTGGACGACGACGGCGACACCCAG
TTCGGCGACCTGCTGGAGGACACCTCCGCGGCCTCCCCCGAGCAGTCCGTGCTCACGCTGCTGCGCAGCGAGGAGCTGGA
GGATCTGATCGACCGCCTCGACCAGCGCACCGCCTCGATCATCAAGGCCCGCTACGGCATCGAGGACGGCCGTGAGCGCA
CCCTGACCGAGGTCGGCAAGCAGCACGGCCTCACCCGGGAGCGGATCCGGCAGATCGAGAAGCACGCGCTGCTGGAGCTG
AAGCGGATGGCGCGCGACACCGGGTTCGACGCGGCGGCCTGA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (270-321)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (33-66)

• Sigma-70 region 3 (Sigma70_r3) (180-256)

• Sigma-70 region 2 (Sigma70_r2) (101-170)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.532	90.39	0.366