Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E5677_RS02235 Genome accession   NZ_CP039251
Coordinates   517047..518105 (-) Length   352 a.a.
NCBI ID   WP_062845338.1    Uniprot ID   A0A2A2B4F8
Organism   Psychrobacter sp. PAMC27889     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 512047..523105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5677_RS02210 (E5677_02210) - 512266..512547 (+) 282 WP_062845343.1 succinate dehydrogenase assembly factor 2 -
  E5677_RS02215 (E5677_02215) - 512716..513171 (+) 456 WP_062845342.1 hypothetical protein -
  E5677_RS02220 (E5677_02220) - 513416..514129 (+) 714 WP_062845341.1 YidB family protein -
  E5677_RS02225 (E5677_02225) - 514438..515895 (+) 1458 WP_062845340.1 anion permease -
  E5677_RS02230 (E5677_02230) - 515912..517006 (-) 1095 WP_062845339.1 regulatory protein RecX -
  E5677_RS02235 (E5677_02235) recA 517047..518105 (-) 1059 WP_062845338.1 recombinase RecA Machinery gene
  E5677_RS02240 (E5677_02240) trmB 519101..519937 (-) 837 WP_062845337.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  E5677_RS02245 (E5677_02245) - 520135..521064 (+) 930 WP_062845336.1 DUF2628 domain-containing protein -
  E5677_RS02250 (E5677_02250) - 521078..522964 (-) 1887 WP_062845335.1 monovalent cation:proton antiporter-2 (CPA2) family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37770.14 Da        Isoelectric Point: 4.9640

>NTDB_id=357615 E5677_RS02235 WP_062845338.1 517047..518105(-) (recA) [Psychrobacter sp. PAMC27889]
MDDNKAKALKAALGQIEKQFGKNTIMHLGDDSAILDADVVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAI
AECQKQGGTCAFIDAEHALDPVYARKLGVNTDELLLSQPDNGEQALEITDMLVRSGAIDMIVIDSVAALTPRAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGAVKNGDEIIGN
QTRVKVIKNKMAPPFRQAEFEITYGEGTNHLAEVIDLGVEIGAVGKAGSWYSYGDEKIGQGKANSVLFLKENPAIAKEIE
DKIRDEKLGTKKDSKAADAVETNEELASEPVQ

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=357615 E5677_RS02235 WP_062845338.1 517047..518105(-) (recA) [Psychrobacter sp. PAMC27889]
ATGGACGACAATAAAGCCAAAGCCCTTAAAGCGGCATTAGGTCAAATTGAGAAACAGTTCGGTAAAAACACCATTATGCA
CCTTGGTGATGACTCAGCCATCCTTGATGCTGATGTGGTCTCCACAGGCTCTCTTGGCTTGGATATTGCTCTTGGTATCG
GTGGACTACCAAAAGGCCGTATCGTTGAGATTTATGGACCTGAAAGCTCTGGTAAAACCACCATGACATTGCAGGCTATT
GCAGAGTGCCAAAAGCAAGGTGGTACTTGTGCCTTTATTGATGCTGAACATGCACTTGATCCTGTTTATGCGCGCAAGCT
AGGCGTGAATACGGATGAGTTACTACTTTCACAGCCTGATAATGGTGAGCAAGCACTTGAGATTACCGATATGTTGGTTC
GCTCAGGTGCTATCGACATGATTGTCATTGACTCCGTTGCGGCTTTGACGCCGCGTGCAGAGATTGAAGGCGAGATGGGT
GATTCTCATATGGGTCTACAAGCGCGTCTCATGAGTCAAGCCCTACGCAAAATTACAGGTAATGCTAAACGCTCTAATTG
CATGGTCGTGTTTATCAACCAGATTCGTATGAAAATTGGTGTTATGTTCGGTAGCCCTGAGACTACAACGGGTGGTAATG
CCCTCAAGTTCTACGCGTCAGTACGCATGGATATACGCCGAATCGGTGCAGTTAAAAATGGTGATGAAATCATTGGTAAC
CAAACGCGCGTTAAAGTCATCAAAAACAAAATGGCACCACCATTTCGCCAAGCTGAGTTCGAAATTACCTATGGCGAAGG
TACCAACCACTTAGCCGAAGTTATTGACTTAGGTGTTGAGATTGGTGCAGTTGGTAAAGCTGGCTCATGGTACAGCTATG
GCGATGAAAAAATCGGCCAAGGTAAAGCCAACTCTGTGCTGTTTTTGAAAGAAAACCCTGCCATTGCCAAAGAAATCGAA
GATAAAATCCGTGACGAAAAGCTTGGCACCAAAAAAGACAGTAAGGCCGCTGATGCTGTTGAAACCAATGAAGAATTGGC
TTCTGAGCCTGTACAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A2B4F8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

75.714

99.432

0.753
  recA Acinetobacter baumannii D1279779

75.652

98.011

0.741
  recA Pseudomonas stutzeri DSM 10701

71.345

97.159

0.693
  recA Vibrio cholerae strain A1552

69.452

98.58

0.685
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.452

98.58

0.685
  recA Glaesserella parasuis strain SC1401

69.096

97.443

0.673
  recA Neisseria gonorrhoeae strain FA1090

70.37

92.045

0.648
  recA Neisseria gonorrhoeae MS11

70.37

92.045

0.648
  recA Neisseria gonorrhoeae MS11

70.37

92.045

0.648
  recA Ralstonia pseudosolanacearum GMI1000

68.788

93.75

0.645
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.644

92.614

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.388

95.17

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

63.914

92.898

0.594
  recA Helicobacter pylori strain NCTC11637

62.275

94.886

0.591
  recA Helicobacter pylori 26695

61.976

94.886

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

90.909

0.563
  recA Streptococcus mitis SK321

55.65

100

0.56
  recA Streptococcus mitis NCTC 12261

55.807

100

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

59.877

92.045

0.551
  recA Streptococcus pneumoniae D39

58.642

92.045

0.54
  recA Streptococcus pneumoniae Rx1

58.642

92.045

0.54
  recA Streptococcus pneumoniae R6

58.642

92.045

0.54
  recA Streptococcus pneumoniae TIGR4

58.642

92.045

0.54
  recA Streptococcus mutans UA159

58.282

92.614

0.54
  recA Lactococcus lactis subsp. cremoris KW2

58.075

91.477

0.531
  recA Streptococcus pyogenes NZ131

57.362

92.614

0.531

Multiple sequence alignment