Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E5554_RS00230 Genome accession   NZ_CP039248
Coordinates   53751..54821 (+) Length   356 a.a.
NCBI ID   WP_004208679.1    Uniprot ID   A0A084EPB7
Organism   Sphingobium sp. PAMC28499     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 48751..59821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5554_RS00210 (E5554_00210) smpB 49648..50130 (+) 483 WP_010337314.1 SsrA-binding protein SmpB -
  E5554_RS00215 (E5554_00215) - 50134..50727 (+) 594 WP_136185632.1 DUF2062 domain-containing protein -
  E5554_RS00220 (E5554_00220) - 50811..53197 (+) 2387 Protein_42 ATP-binding protein -
  E5554_RS00225 (E5554_00225) - 53282..53638 (+) 357 WP_136185633.1 response regulator -
  E5554_RS00230 (E5554_00230) recA 53751..54821 (+) 1071 WP_004208679.1 recombinase RecA Machinery gene
  E5554_RS00235 (E5554_00235) - 54999..55184 (-) 186 WP_004208680.1 hypothetical protein -
  E5554_RS00240 (E5554_00240) - 55273..56601 (-) 1329 WP_136185634.1 methyl-accepting chemotaxis protein -
  E5554_RS00245 (E5554_00245) - 56683..57468 (-) 786 WP_063976444.1 polyphosphate kinase -
  E5554_RS00250 (E5554_00250) - 57534..58610 (-) 1077 WP_017499615.1 DUF5694 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38199.91 Da        Isoelectric Point: 5.3631

>NTDB_id=357588 E5554_RS00230 WP_004208679.1 53751..54821(+) (recA) [Sphingobium sp. PAMC28499]
MTAMLSLIDSKKTGTMDRQKALEAALAQIDRAFGKGSAMKLGSREKIEIESISTGSLGLDIALGIGGLPKGRIIEIYGPE
SSGKTTLTLHAIAEAQKAGGTAAFVDAEHALDPIYAKKLGVDIDELIVSQPDTGEQALEIVDTLVRSNAIDILVVDSVAA
LVPRAEIEGEMGDSHVGLQARLMSQALRKLTGSIARSKCMVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRT
GQIKDRDDIVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEMLDIGVKAGLVEKSGSWFSYDSVRIGQGRENAKTF
LKENPEMADRLEKAIRGKTEEVAEGMMAGPEAGDDD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=357588 E5554_RS00230 WP_004208679.1 53751..54821(+) (recA) [Sphingobium sp. PAMC28499]
ATGACCGCTATGCTCTCACTCATCGATTCCAAGAAGACAGGCACAATGGACAGACAGAAAGCATTGGAGGCGGCGCTCGC
CCAGATTGATCGCGCCTTCGGCAAGGGCAGCGCGATGAAGCTCGGCAGCCGCGAGAAGATCGAGATTGAATCGATCTCGA
CCGGCTCGCTCGGCCTCGACATCGCGCTCGGCATCGGCGGCCTGCCCAAGGGCCGCATCATCGAGATTTACGGCCCGGAA
AGCTCGGGCAAGACCACGCTGACGCTGCATGCGATCGCCGAAGCCCAGAAGGCCGGCGGCACCGCCGCGTTCGTCGACGC
GGAACATGCGCTCGACCCCATCTATGCCAAGAAGCTGGGCGTCGACATTGACGAACTGATCGTGTCGCAGCCCGACACCG
GCGAACAGGCGCTGGAAATCGTCGACACGCTGGTCCGCTCCAACGCCATCGACATCCTCGTCGTCGACTCGGTCGCCGCG
CTGGTGCCGCGCGCCGAGATCGAGGGCGAGATGGGCGACAGCCATGTCGGCCTGCAGGCGCGCCTCATGTCCCAGGCCCT
GCGCAAGCTGACCGGGTCGATCGCCCGCTCCAAGTGCATGGTGATCTTCATCAACCAGGTGCGCATGAAGATCGGCGTGA
TGTACGGCAATCCGGAAACCACCACCGGCGGCAACGCGCTCAAATTCTACGCCTCGGTCCGTCTCGACATCCGTCGCACC
GGCCAGATCAAGGATCGCGACGATATCGTCGGCAACGCGACCCGCGTGAAGGTGGTGAAGAACAAGGTCGCCCCGCCCTT
CAAGCAGGTCGAATTCGACATCATGTATGGTGAGGGCATTTCCAAGATCGGCGAAATGCTCGACATCGGCGTCAAGGCCG
GGCTGGTCGAGAAGTCGGGCTCCTGGTTCTCCTATGACTCGGTCCGCATCGGCCAGGGTCGCGAAAACGCCAAGACCTTC
CTCAAGGAAAATCCCGAAATGGCAGACCGCCTGGAAAAGGCGATCCGCGGCAAGACCGAGGAAGTCGCCGAAGGGATGAT
GGCCGGACCCGAAGCGGGGGATGACGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A084EPB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

68.639

94.944

0.652
  recA Glaesserella parasuis strain SC1401

71.473

89.607

0.64
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

94.382

0.629
  recA Neisseria gonorrhoeae MS11

69.782

90.169

0.629
  recA Neisseria gonorrhoeae MS11

69.782

90.169

0.629
  recA Neisseria gonorrhoeae strain FA1090

69.782

90.169

0.629
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.688

89.888

0.626
  recA Vibrio cholerae strain A1552

69.688

89.888

0.626
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.273

92.697

0.624
  recA Acinetobacter baumannii D1279779

68.438

89.888

0.615
  recA Ralstonia pseudosolanacearum GMI1000

66.364

92.697

0.615
  recA Bacillus subtilis subsp. subtilis str. 168

68.125

89.888

0.612
  recA Acinetobacter baylyi ADP1

68.125

89.888

0.612
  recA Helicobacter pylori 26695

65.152

92.697

0.604
  recA Streptococcus pneumoniae D39

60.969

98.596

0.601
  recA Streptococcus pneumoniae TIGR4

60.969

98.596

0.601
  recA Streptococcus pneumoniae Rx1

60.969

98.596

0.601
  recA Streptococcus pneumoniae R6

60.969

98.596

0.601
  recA Helicobacter pylori strain NCTC11637

64.848

92.697

0.601
  recA Streptococcus mitis SK321

61.032

98.034

0.598
  recA Streptococcus mitis NCTC 12261

61.919

96.629

0.598
  recA Streptococcus pyogenes NZ131

61.562

93.539

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

63.75

89.888

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.145

93.258

0.57
  recA Streptococcus mutans UA159

61.027

92.978

0.567
  recA Lactococcus lactis subsp. cremoris KW2

60.121

92.978

0.559

Multiple sequence alignment