Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E5Y90_RS05950 Genome accession   NZ_CP039143
Coordinates   1271451..1272491 (-) Length   346 a.a.
NCBI ID   WP_151203792.1    Uniprot ID   -
Organism   Acinetobacter sp. 10FS3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1266451..1277491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Y90_RS05920 (E5Y90_05990) lpxD 1266918..1267988 (+) 1071 WP_174659676.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  E5Y90_RS05925 (E5Y90_05995) fabZ 1267994..1268479 (+) 486 WP_373688392.1 3-hydroxyacyl-ACP dehydratase FabZ -
  E5Y90_RS05930 (E5Y90_06000) lpxA 1268476..1269264 (+) 789 WP_174659677.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  E5Y90_RS05935 (E5Y90_06005) - 1269326..1270111 (-) 786 WP_174659678.1 YbgF trimerization domain-containing protein -
  E5Y90_RS05945 (E5Y90_06015) - 1270746..1271360 (-) 615 WP_174660570.1 regulatory protein RecX -
  E5Y90_RS05950 (E5Y90_06020) recA 1271451..1272491 (-) 1041 WP_151203792.1 recombinase RecA Machinery gene
  E5Y90_RS05955 (E5Y90_06025) - 1272637..1273077 (-) 441 WP_151203790.1 RNA-binding S4 domain-containing protein -
  E5Y90_RS05960 (E5Y90_06030) - 1273070..1273756 (-) 687 WP_174659679.1 HAD-IA family hydrolase -
  E5Y90_RS05965 (E5Y90_06035) - 1273770..1274621 (+) 852 WP_174659680.1 3'(2'),5'-bisphosphate nucleotidase CysQ family protein -
  E5Y90_RS05970 (E5Y90_06040) - 1274682..1275419 (+) 738 WP_174659681.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37732.36 Da        Isoelectric Point: 5.3240

>NTDB_id=357208 E5Y90_RS05950 WP_151203792.1 1271451..1272491(-) (recA) [Acinetobacter sp. 10FS3-1]
MDENKNKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDMIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSE
TKVKVVKNKMAPPFKEALFQILYGKGVNHLGELIDLAVQQEIVQKAGAWYSYQGDKIGQGKNNTIRYLEEHKEMAKTIEK
LIREQLLTKAVITEEDDKEEADLLDA

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=357208 E5Y90_RS05950 WP_151203792.1 1271451..1272491(-) (recA) [Acinetobacter sp. 10FS3-1]
ATGGATGAGAATAAAAATAAGGCGCTTAATGCTGCCTTAAGCCAAATTGAAAAACAGTTTGGTAAAAACACAGTGATGCG
TCTTGGTGACAATACCGTGCAGGCAGTTGAAGCTGTATCTACAGGCTCATTAACGCTTGATATTGCACTCGGTATTGGTG
GTTTACCGAAAGGCCGTATTATCGAAATTTATGGTCCTGAATCTTCAGGTAAGACCACGATGACCCTGCAAGCGATTGCT
GAATGTCAAAAAGCAGGCGGCACATGTGCATTTATCGATGCCGAGCACGCGCTTGATCCTCAATACGCCCGTAAACTTGG
TGTAGATATTGATAACCTATTGGTCTCTCAACCCGATCATGGTGAACAGGCACTTGAGATTGCAGACATGCTGGTACGCT
CTGGTGCAATTGACATGATCGTTGTCGACTCCGTGGCTGCCCTAACCCCTCGCGCCGAAATTGAAGGCGAAATGGGCGAC
TCACATATGGGCCTGCAAGCACGTTTGATGAGCCAGGCACTGCGTAAAATTACCGGCAATGCCAAACGTTCAAACTGTAT
GGTGATTTTCATTAACCAGATCCGTATGAAAATTGGTGTAATGTTTGGTAGCCCGGAAACCACGACTGGTGGTAACGCAC
TGAAGTTCTACGCTTCTGTACGTCTGGATATTCGTCGTATCGGTCAGGTTAAAGAAGGTGACGAGATTATTGGTTCTGAA
ACCAAAGTCAAAGTTGTGAAAAACAAAATGGCGCCTCCATTCAAAGAAGCCCTGTTCCAGATTCTGTATGGTAAAGGCGT
AAACCATCTAGGTGAACTGATCGACCTTGCCGTACAGCAAGAAATCGTACAAAAAGCCGGTGCATGGTATTCATATCAAG
GCGACAAGATTGGCCAAGGTAAGAACAACACGATTCGCTACCTGGAAGAACATAAAGAAATGGCTAAAACCATTGAAAAG
CTGATTCGGGAGCAACTGCTTACCAAAGCCGTAATCACTGAAGAAGATGATAAAGAAGAAGCAGATCTTTTAGATGCCTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

89.398

100

0.902
  recA Acinetobacter baumannii D1279779

89.595

100

0.896
  recA Pseudomonas stutzeri DSM 10701

73.121

100

0.731
  recA Vibrio cholerae strain A1552

74.39

94.798

0.705
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.39

94.798

0.705
  recA Glaesserella parasuis strain SC1401

68.116

99.711

0.679
  recA Ralstonia pseudosolanacearum GMI1000

72.026

89.884

0.647
  recA Neisseria gonorrhoeae MS11

66.975

93.642

0.627
  recA Neisseria gonorrhoeae MS11

66.975

93.642

0.627
  recA Neisseria gonorrhoeae strain FA1090

66.975

93.642

0.627
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.647

98.266

0.616
  recA Helicobacter pylori strain NCTC11637

64.526

94.509

0.61
  recA Helicobacter pylori 26695

64.22

94.509

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

96.532

0.604
  recA Streptococcus pneumoniae TIGR4

59.884

99.422

0.595
  recA Streptococcus pneumoniae Rx1

59.884

99.422

0.595
  recA Streptococcus pneumoniae D39

59.884

99.422

0.595
  recA Streptococcus pneumoniae R6

59.884

99.422

0.595
  recA Streptococcus pyogenes NZ131

58.192

100

0.595
  recA Streptococcus mutans UA159

60.058

99.133

0.595
  recA Streptococcus mitis NCTC 12261

59.078

100

0.592
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.963

94.22

0.584
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

93.064

0.581
  recA Streptococcus mitis SK321

61.043

94.22

0.575
  recA Lactococcus lactis subsp. cremoris KW2

59.133

93.353

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

92.775

0.549

Multiple sequence alignment