Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E5D16_RS02820 Genome accession   NZ_CP038642
Coordinates   569780..570826 (-) Length   348 a.a.
NCBI ID   WP_003732286.1    Uniprot ID   A0A3Q0NEE0
Organism   Listeria monocytogenes strain N12-0935     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 564780..575826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5D16_RS02800 (E5D16_02800) - 566118..566480 (-) 363 WP_003744056.1 RicAFT regulatory complex protein RicA family protein -
  E5D16_RS02805 (E5D16_02805) - 566497..567300 (-) 804 WP_003732288.1 TIGR00282 family metallophosphoesterase -
  E5D16_RS02810 (E5D16_02810) - 567306..567803 (-) 498 WP_010990112.1 GNAT family N-acetyltransferase -
  E5D16_RS02815 (E5D16_02815) rny 567917..569479 (-) 1563 WP_003721904.1 ribonuclease Y -
  E5D16_RS02820 (E5D16_02820) recA 569780..570826 (-) 1047 WP_003732286.1 recombinase RecA Machinery gene
  E5D16_RS02825 (E5D16_02825) cinA 571099..572343 (-) 1245 WP_012951603.1 competence/damage-inducible protein A Machinery gene
  E5D16_RS02830 (E5D16_02830) pgsA 572412..572990 (-) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  E5D16_RS02835 (E5D16_02835) - 573080..574009 (-) 930 WP_003732284.1 RodZ family helix-turn-helix domain-containing protein -
  E5D16_RS02840 (E5D16_02840) - 574060..574791 (-) 732 WP_012951602.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37994.08 Da        Isoelectric Point: 4.8079

>NTDB_id=355254 E5D16_RS02820 WP_003732286.1 569780..570826(-) (recA) [Listeria monocytogenes strain N12-0935]
MNDRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDA
HVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT
KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGRENAKQYLKEHTDIRDEISKR
VREEYEIDGSSKEPLDEKEETLSLLDDE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=355254 E5D16_RS02820 WP_003732286.1 569780..570826(-) (recA) [Listeria monocytogenes strain N12-0935]
GTGAATGATCGTCAAGCGGCATTAGACCAAGCTTTAAAACAAATTGAAAAACAATTCGGTAAAGGCTCCATTATGAAATT
AGGGGAACATTCAGATCAAAATATATCTACTATTTCTAGTGGTTCATTAGCGTTAGATATTGCTTTAGGAGTTGGCGGAT
ACCCTCGTGGACGTATTATCGAAGTATACGGACCAGAGAGTTCCGGTAAAACAACTGTTGCGCTTCATGCAATTGCGGAA
GTACAAGCACAAGGCGGAACAGCAGCATTTATCGATGCTGAGCATGCGTTGGATCCGGCTTATGCTAAAAACCTAGGTGT
AAATATTGATGAATTATTACTATCTCAACCAGATACAGGAGAACAAGCTTTAGAGATTGCTGAAGCTTTAGTTAGAAGTG
GTGCAGTTGATATGTTAGTAATTGACTCCGTTGCAGCACTTGTACCACGTGCTGAAATCGAAGGCGAGATGGGCGATGCT
CATGTTGGATTACAAGCACGTTTAATGTCCCAAGCATTGCGTAAACTTTCTGGTGTTATTAATAAATCAAAAACCATTGC
TATTTTCATTAACCAAATTCGTGAAAAAGTTGGTGTTATGTTTGGTAACCCAGAAATCACACCAGGTGGACGTGCGCTTA
AATTCTATTCTACTGTACGTTTAGAAGTAAGACGTGCGGAACAACTGAAGCAAGGTACAGATGTAATGGGTAACAAAACA
AAAATCAAAGTTGTAAAAAATAAAGTAGCGCCACCATTCCGTATTGCCGAAGTAGATATTATGTATGGTGAAGGTATTTC
GCGTGAAGGTGAGCTTGTTGATATGGCTGCTGAAGTGGATGTAATCAATAAGAGTGGTTCGTGGTATTCTTATAAAGAAG
AACGCATCGGTCAAGGCCGTGAGAATGCAAAACAATATCTGAAAGAACACACAGATATTCGTGATGAGATTTCTAAGCGC
GTTCGTGAAGAATATGAAATTGATGGAAGCAGCAAAGAGCCTCTTGACGAAAAAGAAGAAACATTAAGTTTACTAGATGA
TGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0NEE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.146

94.253

0.793
  recA Latilactobacillus sakei subsp. sakei 23K

77.011

100

0.77
  recA Streptococcus pneumoniae D39

70.783

95.402

0.675
  recA Streptococcus pneumoniae R6

70.783

95.402

0.675
  recA Streptococcus pneumoniae TIGR4

70.783

95.402

0.675
  recA Streptococcus pneumoniae Rx1

70.783

95.402

0.675
  recA Streptococcus mitis SK321

66.762

100

0.67
  recA Streptococcus mitis NCTC 12261

69.88

95.402

0.667
  recA Streptococcus pyogenes NZ131

69.817

94.253

0.658
  recA Streptococcus mutans UA159

68.902

94.253

0.649
  recA Lactococcus lactis subsp. cremoris KW2

68.502

93.966

0.644
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.29

97.989

0.601
  recA Neisseria gonorrhoeae strain FA1090

64.596

92.529

0.598
  recA Neisseria gonorrhoeae MS11

64.596

92.529

0.598
  recA Neisseria gonorrhoeae MS11

64.596

92.529

0.598
  recA Helicobacter pylori 26695

59.942

98.276

0.589
  recA Helicobacter pylori strain NCTC11637

59.942

98.276

0.589
  recA Acinetobacter baylyi ADP1

59.249

99.425

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

92.241

0.589
  recA Vibrio cholerae strain A1552

63.863

92.241

0.589
  recA Acinetobacter baumannii D1279779

59.475

98.563

0.586
  recA Ralstonia pseudosolanacearum GMI1000

66.019

88.793

0.586
  recA Pseudomonas stutzeri DSM 10701

62.813

91.954

0.578
  recA Glaesserella parasuis strain SC1401

63.009

91.667

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

91.954

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.912

95.115

0.56

Multiple sequence alignment