Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DhcFL2_RS07525 Genome accession   NZ_CP038470
Coordinates   1391588..1392601 (+) Length   337 a.a.
NCBI ID   WP_011310041.1    Uniprot ID   A0A916KNE6
Organism   Dehalococcoides mccartyi strain FL2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1386588..1397601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DhcFL2_RS07490 (DhcFL2_07490) tatC 1387802..1388590 (-) 789 WP_011310034.1 twin-arginine translocase subunit TatC -
  DhcFL2_RS07495 (DhcFL2_07495) - 1388587..1388877 (-) 291 WP_011310035.1 twin-arginine translocase TatA/TatE family subunit -
  DhcFL2_RS07500 (DhcFL2_07500) - 1388954..1389190 (-) 237 WP_034376979.1 twin-arginine translocase TatA/TatE family subunit -
  DhcFL2_RS07505 (DhcFL2_07505) tatA 1389282..1389479 (-) 198 WP_011310037.1 twin-arginine translocase TatA/TatE family subunit -
  DhcFL2_RS07510 (DhcFL2_07510) folP 1389727..1390575 (+) 849 WP_012034246.1 dihydropteroate synthase -
  DhcFL2_RS07515 (DhcFL2_07515) folK 1390566..1391093 (+) 528 WP_012034247.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DhcFL2_RS07520 (DhcFL2_07520) queD 1391093..1391464 (+) 372 WP_015408053.1 6-carboxytetrahydropterin synthase QueD -
  DhcFL2_RS07525 (DhcFL2_07525) recA 1391588..1392601 (+) 1014 WP_011310041.1 recombinase RecA Machinery gene
  DhcFL2_RS07530 (DhcFL2_07530) - 1392689..1393333 (+) 645 WP_011310042.1 regulatory protein RecX -
  DhcFL2_RS07535 (DhcFL2_07535) rny 1393402..1394985 (+) 1584 WP_011310043.1 ribonuclease Y -
  DhcFL2_RS07540 (DhcFL2_07540) - 1394997..1395767 (+) 771 WP_011310044.1 TIGR00282 family metallophosphoesterase -
  DhcFL2_RS07545 (DhcFL2_07545) - 1395770..1396633 (+) 864 WP_135350464.1 PHP domain-containing protein -
  DhcFL2_RS07550 (DhcFL2_07550) - 1396630..1397328 (+) 699 WP_034376977.1 glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36044.38 Da        Isoelectric Point: 6.2983

>NTDB_id=354709 DhcFL2_RS07525 WP_011310041.1 1391588..1392601(+) (recA) [Dehalococcoides mccartyi strain FL2]
MTTEKDKALELTVGIIEKRFGKGSIMKLSDPSFRQTVEFIPTSSLALDIALGVGGIPRGRVAEIFGPEGSGKTTLAQHII
AQAQKMGEKAAYIDVEHALDPKYASTCGVNLDELLISQPDTGEEALGIAEELVRSAAIGVIVIDSVAALVPKAEIEGDMG
DSHVGLQARLMSQALRKLTASIGQTRTAVVFINQLREKVGVMFGNPEVTPGGRALKFYSSVRIDLRRIETIKQGTVAVGT
RVRAKVVKNKVAPPFRTAEFDIMFDSGISREGNLIDLGVSSEVIRKAGAFFSYGDIRLGQGRESAKNYLAANPDLAQEIE
EKIRASAVTLCSIGDGD

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=354709 DhcFL2_RS07525 WP_011310041.1 1391588..1392601(+) (recA) [Dehalococcoides mccartyi strain FL2]
ATGACCACGGAAAAAGATAAGGCTCTGGAACTCACTGTAGGCATAATAGAAAAACGCTTTGGCAAGGGTTCAATAATGAA
GTTGAGCGACCCTTCCTTCCGGCAAACAGTTGAGTTCATTCCTACAAGTTCACTGGCACTTGATATTGCCCTGGGCGTTG
GCGGGATTCCCAGAGGCCGGGTAGCTGAAATATTCGGTCCTGAAGGCTCTGGCAAGACTACTCTTGCCCAACACATTATT
GCCCAGGCCCAAAAAATGGGTGAAAAAGCCGCCTATATAGACGTGGAACATGCCCTTGATCCTAAATACGCTTCAACCTG
CGGGGTTAATCTGGATGAGCTTTTAATATCTCAACCGGATACCGGCGAAGAAGCGCTTGGTATTGCCGAAGAGCTGGTGA
GAAGTGCTGCCATAGGTGTAATCGTGATTGACAGTGTGGCGGCGCTGGTACCCAAAGCTGAAATAGAAGGCGACATGGGT
GACTCACATGTAGGTTTGCAGGCCAGGCTTATGTCTCAGGCCCTGCGAAAATTGACCGCTTCCATCGGGCAAACCAGAAC
GGCCGTTGTCTTTATTAACCAGTTAAGAGAAAAGGTGGGTGTTATGTTCGGCAATCCCGAAGTCACCCCCGGCGGCCGGG
CGCTCAAGTTTTACAGTTCGGTGCGTATAGATCTAAGGCGCATAGAAACCATCAAGCAGGGTACCGTAGCTGTTGGTACA
CGCGTAAGAGCCAAAGTGGTAAAAAATAAGGTTGCTCCTCCTTTCAGGACAGCCGAATTTGATATCATGTTTGACTCCGG
TATCAGCCGCGAGGGCAACCTTATTGATTTAGGCGTAAGCAGTGAAGTTATAAGGAAAGCAGGGGCTTTCTTTTCCTATG
GTGACATTCGCCTGGGGCAAGGCAGAGAGAGCGCCAAAAACTATCTGGCGGCAAACCCGGATCTGGCGCAAGAAATTGAA
GAAAAAATACGTGCCTCAGCGGTCACCCTTTGCAGTATTGGCGATGGCGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

62.539

95.846

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

95.549

0.596
  recA Neisseria gonorrhoeae strain FA1090

60.308

96.439

0.582
  recA Neisseria gonorrhoeae MS11

60.308

96.439

0.582
  recA Neisseria gonorrhoeae MS11

60.308

96.439

0.582
  recA Streptococcus mitis SK321

59.692

96.439

0.576
  recA Streptococcus mitis NCTC 12261

59.692

96.439

0.576
  recA Streptococcus pyogenes NZ131

59.385

96.439

0.573
  recA Streptococcus pneumoniae R6

59.202

96.736

0.573
  recA Streptococcus pneumoniae Rx1

59.202

96.736

0.573
  recA Streptococcus pneumoniae D39

59.202

96.736

0.573
  recA Streptococcus pneumoniae TIGR4

59.202

96.736

0.573
  recA Glaesserella parasuis strain SC1401

59.443

95.846

0.57
  recA Pseudomonas stutzeri DSM 10701

59.077

96.439

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.259

96.142

0.57
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.41

97.033

0.567
  recA Ralstonia pseudosolanacearum GMI1000

61.812

91.691

0.567
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.642

96.142

0.564
  recA Lactococcus lactis subsp. cremoris KW2

58.104

97.033

0.564
  recA Vibrio cholerae strain A1552

58.642

96.142

0.564
  recA Streptococcus mutans UA159

58.154

96.439

0.561
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.187

97.033

0.555
  recA Helicobacter pylori strain NCTC11637

57.716

96.142

0.555
  recA Helicobacter pylori 26695

57.716

96.142

0.555
  recA Acinetobacter baylyi ADP1

55.723

98.516

0.549
  recA Acinetobacter baumannii D1279779

55.09

99.11

0.546

Multiple sequence alignment