Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | E4Z61_RS22025 | Genome accession | NZ_CP038469 |
| Coordinates | 4457903..4458967 (+) | Length | 354 a.a. |
| NCBI ID | WP_135324568.1 | Uniprot ID | - |
| Organism | Citrobacter tructae strain SNU WT2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4450850..4501081 | 4457903..4458967 | within | 0 |
Gene organization within MGE regions
Location: 4450850..4501081
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4Z61_RS21980 (E4Z61_21985) | gutQ | 4450850..4451815 (-) | 966 | WP_135324560.1 | arabinose-5-phosphate isomerase GutQ | - |
| E4Z61_RS21985 (E4Z61_21990) | srlR | 4451808..4452581 (-) | 774 | WP_006687181.1 | glucitol operon DNA-binding transcriptional repressor SrlR | - |
| E4Z61_RS21990 (E4Z61_21995) | gutM | 4452655..4453014 (-) | 360 | WP_135324561.1 | transcriptional regulator GutM | - |
| E4Z61_RS21995 (E4Z61_22000) | srlD | 4453073..4453852 (-) | 780 | WP_135324562.1 | sorbitol-6-phosphate dehydrogenase | - |
| E4Z61_RS22000 (E4Z61_22005) | srlB | 4453870..4454232 (-) | 363 | WP_135324563.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| E4Z61_RS22005 (E4Z61_22010) | srlE | 4454246..4455217 (-) | 972 | WP_135324564.1 | PTS glucitol/sorbitol transporter subunit IIB | - |
| E4Z61_RS22010 (E4Z61_22015) | srlA | 4455214..4455777 (-) | 564 | WP_135324565.1 | PTS glucitol/sorbitol transporter subunit IIC | - |
| E4Z61_RS22015 (E4Z61_22020) | mltB | 4456037..4457116 (+) | 1080 | WP_205746874.1 | lytic murein transglycosylase B | - |
| E4Z61_RS22020 (E4Z61_22025) | pncC | 4457313..4457810 (+) | 498 | WP_135324567.1 | nicotinamide-nucleotide amidase | - |
| E4Z61_RS22025 (E4Z61_22030) | recA | 4457903..4458967 (+) | 1065 | WP_135324568.1 | recombinase RecA | Machinery gene |
| E4Z61_RS22030 (E4Z61_22035) | recX | 4459036..4459536 (+) | 501 | WP_135324569.1 | recombination regulator RecX | - |
| E4Z61_RS22035 (E4Z61_22040) | alaS | 4459666..4462293 (+) | 2628 | WP_135324570.1 | alanine--tRNA ligase | - |
| E4Z61_RS22040 (E4Z61_22045) | csrA | 4462531..4462716 (+) | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| E4Z61_RS22070 (E4Z61_22075) | yqaB | 4463955..4464521 (+) | 567 | WP_135324571.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| E4Z61_RS22075 (E4Z61_22080) | - | 4464518..4464946 (+) | 429 | WP_135324572.1 | YqaA family protein | - |
| E4Z61_RS22080 (E4Z61_22085) | gshA | 4465024..4466580 (+) | 1557 | WP_135324573.1 | glutamate--cysteine ligase | - |
| E4Z61_RS22085 (E4Z61_22090) | luxS | 4466730..4467245 (+) | 516 | WP_016154160.1 | S-ribosylhomocysteine lyase | - |
| E4Z61_RS22090 (E4Z61_22095) | emrB | 4467294..4468832 (-) | 1539 | WP_135324574.1 | multidrug efflux MFS transporter permease subunit EmrB | - |
| E4Z61_RS22095 (E4Z61_22100) | emrA | 4468849..4470021 (-) | 1173 | WP_135324575.1 | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | - |
| E4Z61_RS22100 (E4Z61_22105) | mprA | 4470151..4470681 (-) | 531 | WP_135324576.1 | transcriptional repressor MprA | - |
| E4Z61_RS22105 (E4Z61_22110) | ygaH | 4470772..4471107 (-) | 336 | WP_135324577.1 | L-valine transporter subunit YgaH | - |
| E4Z61_RS22110 (E4Z61_22115) | - | 4471097..4471834 (-) | 738 | WP_135324578.1 | AzlC family ABC transporter permease | - |
| E4Z61_RS22115 (E4Z61_22120) | - | 4471957..4473141 (-) | 1185 | WP_135324579.1 | MFS transporter | - |
| E4Z61_RS22120 (E4Z61_22125) | proX | 4473290..4474285 (-) | 996 | WP_135324580.1 | glycine betaine/L-proline ABC transporter substrate-binding protein ProX | - |
| E4Z61_RS22125 (E4Z61_22130) | proW | 4474474..4475538 (-) | 1065 | WP_135324581.1 | glycine betaine/L-proline ABC transporter permease ProW | - |
| E4Z61_RS22130 (E4Z61_22135) | proV | 4475531..4476733 (-) | 1203 | WP_135324582.1 | glycine betaine/L-proline ABC transporter ATP-binding protein ProV | - |
| E4Z61_RS22140 (E4Z61_22145) | nrdF | 4477088..4478047 (-) | 960 | WP_135324583.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| E4Z61_RS22145 (E4Z61_22150) | nrdE | 4478058..4480202 (-) | 2145 | WP_135324584.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| E4Z61_RS22150 (E4Z61_22155) | nrdI | 4480175..4480585 (-) | 411 | WP_135324585.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| E4Z61_RS22155 (E4Z61_22160) | nrdH | 4480582..4480827 (-) | 246 | WP_135324586.1 | glutaredoxin-like protein NrdH | - |
| E4Z61_RS22160 (E4Z61_22165) | - | 4481030..4481461 (-) | 432 | WP_135324587.1 | carboxymuconolactone decarboxylase family protein | - |
| E4Z61_RS22165 (E4Z61_22170) | - | 4481552..4482886 (+) | 1335 | WP_135324588.1 | PLP-dependent aminotransferase family protein | - |
| E4Z61_RS22170 (E4Z61_22175) | - | 4483010..4483360 (+) | 351 | WP_135324589.1 | DUF2002 family protein | - |
| E4Z61_RS22175 (E4Z61_22180) | alaE | 4483396..4483845 (-) | 450 | WP_135324590.1 | L-alanine exporter AlaE | - |
| E4Z61_RS22180 (E4Z61_22185) | stpA | 4484334..4484744 (+) | 411 | WP_135324591.1 | DNA-binding protein StpA | - |
| E4Z61_RS22185 (E4Z61_22190) | - | 4484832..4485359 (-) | 528 | WP_135324592.1 | rhodanese family protein | - |
| E4Z61_RS22190 (E4Z61_22195) | - | 4485369..4485668 (-) | 300 | WP_135324593.1 | ArsR/SmtB family transcription factor | - |
| E4Z61_RS22195 (E4Z61_22200) | - | 4486055..4486213 (+) | 159 | WP_003037242.1 | YqaE/Pmp3 family membrane protein | - |
| E4Z61_RS22200 (E4Z61_22205) | lysM | 4486311..4486760 (+) | 450 | WP_135324594.1 | peptidoglycan-binding protein LysM | - |
| E4Z61_RS22205 (E4Z61_22210) | csiR | 4486773..4487459 (-) | 687 | WP_135324595.1 | DNA-binding transcriptional regulator CsiR | - |
| E4Z61_RS22210 (E4Z61_22215) | gabP | 4487505..4488905 (-) | 1401 | WP_135324596.1 | GABA permease | - |
| E4Z61_RS22215 (E4Z61_22220) | gabT | 4489092..4490375 (-) | 1284 | WP_135324597.1 | 4-aminobutyrate--2-oxoglutarate transaminase | - |
| E4Z61_RS22220 (E4Z61_22225) | gabD | 4490400..4491848 (-) | 1449 | WP_135324598.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| E4Z61_RS22225 (E4Z61_22230) | lhgO | 4491872..4493140 (-) | 1269 | WP_135324599.1 | L-2-hydroxyglutarate oxidase | - |
| E4Z61_RS22230 (E4Z61_22235) | glaH | 4493160..4494137 (-) | 978 | WP_135324600.1 | glutarate dioxygenase GlaH | - |
| E4Z61_RS22235 (E4Z61_22240) | - | 4494396..4494998 (-) | 603 | WP_135324601.1 | short chain dehydrogenase | - |
| E4Z61_RS22240 (E4Z61_22245) | - | 4495097..4495987 (+) | 891 | WP_135324602.1 | LysR family transcriptional regulator | - |
| E4Z61_RS22245 (E4Z61_22250) | - | 4496243..4500649 (-) | 4407 | WP_135324603.1 | alpha-L-fucosidase | - |
| E4Z61_RS22250 (E4Z61_22255) | - | 4500689..4501081 (-) | 393 | WP_135324604.1 | M15 family metallopeptidase | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 38113.48 Da Isoelectric Point: 4.8134
>NTDB_id=354696 E4Z61_RS22025 WP_135324568.1 4457903..4458967(+) (recA) [Citrobacter tructae strain SNU WT2]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATNWLKENPAAAKEI
EKKLRELLLNNPDSTPDFSVDNSGEDVKETNEDF
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATNWLKENPAAAKEI
EKKLRELLLNNPDSTPDFSVDNSGEDVKETNEDF
Nucleotide
Download Length: 1065 bp
>NTDB_id=354696 E4Z61_RS22025 WP_135324568.1 4457903..4458967(+) (recA) [Citrobacter tructae strain SNU WT2]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCTGCAGCGCTGGGTCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCTTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCCACCGGTTCGCTTTCTCTGGATATCGCATTGGGTG
CGGGCGGTTTGCCGATGGGGCGCATTGTTGAAATCTACGGCCCTGAATCCTCCGGTAAAACGACCCTGACGCTGCAGGTT
ATTGCTGCTGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCAGAACATGCGCTTGACCCTGTTTATGCCCGTAA
GCTTGGCGTTGATATCGACAACCTGCTGTGCTCTCAGCCAGATACCGGTGAACAGGCGCTGGAAATCTGTGACGCGCTGG
CGCGTTCCGGTGCTGTAGATGTTCTCGTTGTCGATTCCGTTGCCGCACTGACGCCGAAGGCGGAAATCGAAGGCGAGATC
GGTGACTCTCATATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAATCTGAAACAGTCCAA
CACATTGCTGATTTTCATCAACCAGATCCGTATGAAAATTGGCGTCATGTTTGGTAACCCGGAAACCACTACCGGTGGTA
ACGCACTGAAGTTCTACGCTTCTGTTCGCCTGGACATCCGTCGTATTGGCGCGGTGAAAGAGGGTGATAACGTGGTGGGC
AGCGAAACCCGCGTTAAGGTCGTGAAAAACAAAATTGCCGCACCGTTTAAACAGGCTGAATTCCAGATCCTTTACGGTGA
AGGCATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCCGGTGCATGGTACAGCT
ACAACGGCGAGAAAATTGGTCAGGGTAAAGCAAACGCAACCAACTGGCTGAAAGAGAATCCGGCTGCCGCGAAAGAAATT
GAGAAAAAATTACGCGAATTATTGCTCAATAACCCGGATTCAACGCCGGACTTCTCCGTCGATAACAGCGGCGAAGATGT
AAAAGAAACAAACGAAGATTTTTGA
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCTGCAGCGCTGGGTCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCTTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCCACCGGTTCGCTTTCTCTGGATATCGCATTGGGTG
CGGGCGGTTTGCCGATGGGGCGCATTGTTGAAATCTACGGCCCTGAATCCTCCGGTAAAACGACCCTGACGCTGCAGGTT
ATTGCTGCTGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCAGAACATGCGCTTGACCCTGTTTATGCCCGTAA
GCTTGGCGTTGATATCGACAACCTGCTGTGCTCTCAGCCAGATACCGGTGAACAGGCGCTGGAAATCTGTGACGCGCTGG
CGCGTTCCGGTGCTGTAGATGTTCTCGTTGTCGATTCCGTTGCCGCACTGACGCCGAAGGCGGAAATCGAAGGCGAGATC
GGTGACTCTCATATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAATCTGAAACAGTCCAA
CACATTGCTGATTTTCATCAACCAGATCCGTATGAAAATTGGCGTCATGTTTGGTAACCCGGAAACCACTACCGGTGGTA
ACGCACTGAAGTTCTACGCTTCTGTTCGCCTGGACATCCGTCGTATTGGCGCGGTGAAAGAGGGTGATAACGTGGTGGGC
AGCGAAACCCGCGTTAAGGTCGTGAAAAACAAAATTGCCGCACCGTTTAAACAGGCTGAATTCCAGATCCTTTACGGTGA
AGGCATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCCGGTGCATGGTACAGCT
ACAACGGCGAGAAAATTGGTCAGGGTAAAGCAAACGCAACCAACTGGCTGAAAGAGAATCCGGCTGCCGCGAAAGAAATT
GAGAAAAAATTACGCGAATTATTGCTCAATAACCCGGATTCAACGCCGGACTTCTCCGTCGATAACAGCGGCGAAGATGT
AAAAGAAACAAACGAAGATTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.