Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | E4T63_RS06080 | Genome accession | NZ_CP038438 |
| Coordinates | 1347023..1348081 (+) | Length | 352 a.a. |
| NCBI ID | WP_003222269.1 | Uniprot ID | J2PVU0 |
| Organism | Pseudomonas fluorescens strain LBUM677 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1309104..1352523 | 1347023..1348081 | within | 0 |
Gene organization within MGE regions
Location: 1309104..1352523
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4T63_RS05855 (E4T63_05855) | - | 1309104..1309985 (+) | 882 | WP_098967475.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| E4T63_RS05860 (E4T63_05860) | rpoS | 1310091..1311101 (+) | 1011 | WP_007964304.1 | RNA polymerase sigma factor RpoS | - |
| E4T63_RS05865 (E4T63_05865) | fdxA | 1311703..1312026 (-) | 324 | WP_003222178.1 | ferredoxin FdxA | - |
| E4T63_RS05870 (E4T63_05870) | mutS | 1312190..1314772 (-) | 2583 | WP_027611048.1 | DNA mismatch repair protein MutS | - |
| E4T63_RS05875 (E4T63_05875) | - | 1314982..1315716 (+) | 735 | WP_027611049.1 | XRE family transcriptional regulator | - |
| E4T63_RS05880 (E4T63_05880) | - | 1316244..1316585 (+) | 342 | WP_003222183.1 | phage holin family protein | - |
| E4T63_RS05885 (E4T63_05885) | - | 1316660..1317181 (+) | 522 | WP_135295062.1 | hypothetical protein | - |
| E4T63_RS05890 (E4T63_05890) | - | 1317185..1317793 (+) | 609 | WP_135295063.1 | phage baseplate assembly protein V | - |
| E4T63_RS05895 (E4T63_05895) | - | 1317808..1318140 (+) | 333 | WP_003222189.1 | phage baseplate protein | - |
| E4T63_RS05900 (E4T63_05900) | - | 1318137..1319132 (+) | 996 | WP_135295064.1 | baseplate J/gp47 family protein | - |
| E4T63_RS05905 (E4T63_05905) | - | 1319129..1319764 (+) | 636 | WP_135295065.1 | phage tail protein I | - |
| E4T63_RS05910 (E4T63_05910) | - | 1319765..1322203 (+) | 2439 | WP_135295066.1 | phage tail protein | - |
| E4T63_RS05915 (E4T63_05915) | - | 1322213..1322743 (+) | 531 | WP_135295067.1 | DUF4376 domain-containing protein | - |
| E4T63_RS05920 (E4T63_05920) | - | 1322857..1323042 (+) | 186 | WP_135295068.1 | hypothetical protein | - |
| E4T63_RS05925 (E4T63_05925) | - | 1323045..1324211 (+) | 1167 | WP_047291938.1 | tail protein | - |
| E4T63_RS05930 (E4T63_05930) | - | 1324211..1324717 (+) | 507 | WP_007908799.1 | phage major tail tube protein | - |
| E4T63_RS05935 (E4T63_05935) | - | 1324872..1325453 (+) | 582 | WP_135295069.1 | phage tail assembly protein | - |
| E4T63_RS05940 (E4T63_05940) | - | 1325582..1327837 (+) | 2256 | WP_135295070.1 | phage tail tape measure protein | - |
| E4T63_RS05945 (E4T63_05945) | - | 1327837..1328220 (+) | 384 | WP_047601251.1 | phage tail protein | - |
| E4T63_RS05950 (E4T63_05950) | - | 1328213..1328425 (+) | 213 | WP_108589829.1 | tail protein X | - |
| E4T63_RS05955 (E4T63_05955) | - | 1328435..1329463 (+) | 1029 | WP_135295071.1 | phage late control D family protein | - |
| E4T63_RS05965 (E4T63_05965) | - | 1329622..1330206 (+) | 585 | WP_135295072.1 | hypothetical protein | - |
| E4T63_RS05970 (E4T63_05970) | - | 1330203..1330382 (+) | 180 | WP_027611066.1 | DUF2635 domain-containing protein | - |
| E4T63_RS05975 (E4T63_05975) | - | 1330382..1331878 (+) | 1497 | WP_135295073.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| E4T63_RS05980 (E4T63_05980) | - | 1331946..1332293 (+) | 348 | WP_095138392.1 | phage tail tube protein | - |
| E4T63_RS05985 (E4T63_05985) | - | 1332290..1332586 (+) | 297 | WP_003222226.1 | phage tail assembly protein | - |
| E4T63_RS05990 (E4T63_05990) | - | 1332717..1334615 (+) | 1899 | WP_135295074.1 | phage tail protein | - |
| E4T63_RS05995 (E4T63_05995) | - | 1334602..1335837 (+) | 1236 | WP_135295075.1 | DNA circularization N-terminal domain-containing protein | - |
| E4T63_RS06000 (E4T63_06000) | - | 1335841..1336884 (+) | 1044 | WP_134785560.1 | phage baseplate assembly protein | - |
| E4T63_RS06005 (E4T63_06005) | - | 1337028..1337537 (+) | 510 | WP_027611071.1 | phage baseplate assembly protein V | - |
| E4T63_RS06010 (E4T63_06010) | - | 1337537..1337935 (+) | 399 | WP_007964342.1 | phage GP46 family protein | - |
| E4T63_RS06015 (E4T63_06015) | - | 1337925..1338971 (+) | 1047 | WP_135295076.1 | baseplate J/gp47 family protein | - |
| E4T63_RS06020 (E4T63_06020) | - | 1338959..1339558 (+) | 600 | WP_003222238.1 | putative phage tail protein | - |
| E4T63_RS06025 (E4T63_06025) | - | 1339573..1340304 (+) | 732 | WP_135295077.1 | hypothetical protein | - |
| E4T63_RS06030 (E4T63_06030) | - | 1340306..1340731 (+) | 426 | WP_134785562.1 | phage tail assembly chaperone | - |
| E4T63_RS06035 (E4T63_06035) | - | 1340789..1341883 (+) | 1095 | WP_135295078.1 | phage tail protein | - |
| E4T63_RS06040 (E4T63_06040) | - | 1341892..1342458 (+) | 567 | WP_135295079.1 | tail fiber assembly protein | - |
| E4T63_RS06045 (E4T63_06045) | - | 1342481..1343377 (+) | 897 | WP_097086502.1 | phage tail protein | - |
| E4T63_RS06050 (E4T63_06050) | - | 1343378..1343824 (+) | 447 | WP_134785564.1 | phage tail assembly chaperone | - |
| E4T63_RS06055 (E4T63_06055) | - | 1343843..1345045 (+) | 1203 | WP_135295080.1 | carbohydrate binding domain-containing protein | - |
| E4T63_RS06060 (E4T63_06060) | - | 1345055..1345273 (+) | 219 | WP_098967518.1 | hypothetical protein | - |
| E4T63_RS06065 (E4T63_06065) | - | 1345307..1345873 (+) | 567 | WP_135295081.1 | glycoside hydrolase family 19 protein | - |
| E4T63_RS06070 (E4T63_06070) | - | 1345852..1346370 (+) | 519 | WP_123587008.1 | lysis system i-spanin subunit Rz | - |
| E4T63_RS06075 (E4T63_06075) | - | 1346439..1346939 (+) | 501 | WP_096795871.1 | CinA family protein | - |
| E4T63_RS06080 (E4T63_06080) | recA | 1347023..1348081 (+) | 1059 | WP_003222269.1 | recombinase RecA | Machinery gene |
| E4T63_RS06085 (E4T63_06085) | recX | 1348090..1348560 (+) | 471 | WP_135295082.1 | recombination regulator RecX | - |
| E4T63_RS06090 (E4T63_06090) | - | 1348616..1349734 (-) | 1119 | WP_098967521.1 | TIGR00730 family Rossman fold protein | - |
| E4T63_RS06095 (E4T63_06095) | - | 1350092..1350286 (+) | 195 | WP_027611087.1 | hypothetical protein | - |
| E4T63_RS06100 (E4T63_06100) | - | 1350287..1350712 (-) | 426 | WP_027611088.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| E4T63_RS06105 (E4T63_06105) | - | 1350902..1351648 (+) | 747 | WP_177408950.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| E4T63_RS06110 (E4T63_06110) | erdR | 1351873..1352523 (+) | 651 | WP_027611090.1 | response regulator transcription factor ErdR | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37447.98 Da Isoelectric Point: 5.3111
>NTDB_id=354279 E4T63_RS06080 WP_003222269.1 1347023..1348081(+) (recA) [Pseudomonas fluorescens strain LBUM677]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEVAAKLEK
QLRDKLLSPAVIADSKASAVKETEDDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEVAAKLEK
QLRDKLLSPAVIADSKASAVKETEDDLADADI
Nucleotide
Download Length: 1059 bp
>NTDB_id=354279 E4T63_RS06080 WP_003222269.1 1347023..1348081(+) (recA) [Pseudomonas fluorescens strain LBUM677]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTGATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACCGGCTCTCTGGGTCTGGACATCGCACTCGGCATCGGCG
GTCTGCCAAAAGGCCGTATTGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACACTGACGCTGTCCGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACCTGCGCCTTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGTGAACAGGCGCTGGAAATCACTGACATGCTGGTGCGCT
CCAACGCAGTAGACGTGATCATCGTCGACTCCGTGGCTGCACTGGTACCGAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTCGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTGGCGTCGCCGTTCCGTCAGGCCGAGTTCCAGATCCTTTACGGCAAAGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGCGTGCTGCATGGTTTCGTCGAGAAATCCGGCGCCTGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGAAGTCGCTGCCAAGCTCGAGAAG
CAGCTGCGTGACAAACTGCTGTCGCCAGCGGTGATCGCCGACTCCAAGGCTTCTGCGGTCAAAGAGACCGAAGACGACCT
GGCTGACGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTGATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACCGGCTCTCTGGGTCTGGACATCGCACTCGGCATCGGCG
GTCTGCCAAAAGGCCGTATTGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACACTGACGCTGTCCGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACCTGCGCCTTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGTGAACAGGCGCTGGAAATCACTGACATGCTGGTGCGCT
CCAACGCAGTAGACGTGATCATCGTCGACTCCGTGGCTGCACTGGTACCGAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTCGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTGGCGTCGCCGTTCCGTCAGGCCGAGTTCCAGATCCTTTACGGCAAAGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGCGTGCTGCATGGTTTCGTCGAGAAATCCGGCGCCTGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGAAGTCGCTGCCAAGCTCGAGAAG
CAGCTGCGTGACAAACTGCTGTCGCCAGCGGTGATCGCCGACTCCAAGGCTTCTGCGGTCAAAGAGACCGAAGACGACCT
GGCTGACGCTGATATCTGA
Similar proteins
Only experimentally validated proteins are listed.