Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E4T21_RS17195 Genome accession   NZ_CP038437
Coordinates   3918120..3919193 (-) Length   357 a.a.
NCBI ID   WP_149286201.1    Uniprot ID   A0A5C1NMR6
Organism   Halomonas binhaiensis strain Y2R2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3913120..3924193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T21_RS17180 (E4T21_17150) - 3913437..3914687 (-) 1251 WP_149286198.1 aspartate kinase -
  E4T21_RS17185 (E4T21_17155) alaS 3914853..3917459 (-) 2607 WP_149286199.1 alanine--tRNA ligase -
  E4T21_RS17190 (E4T21_17160) - 3917656..3918123 (-) 468 WP_149286200.1 regulatory protein RecX -
  E4T21_RS17195 (E4T21_17165) recA 3918120..3919193 (-) 1074 WP_149286201.1 recombinase RecA Machinery gene
  E4T21_RS17200 (E4T21_17170) - 3919372..3919890 (-) 519 WP_149286202.1 CinA family protein -
  E4T21_RS17205 (E4T21_17175) - 3920007..3920165 (-) 159 WP_149286203.1 YqaE/Pmp3 family membrane protein -
  E4T21_RS17210 (E4T21_17180) mutS 3920370..3922958 (+) 2589 WP_420827712.1 DNA mismatch repair protein MutS -
  E4T21_RS17215 (E4T21_17185) fdxA 3923404..3923727 (+) 324 WP_149286204.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38407.83 Da        Isoelectric Point: 4.9169

>NTDB_id=354269 E4T21_RS17195 WP_149286201.1 3918120..3919193(-) (recA) [Halomonas binhaiensis strain Y2R2]
MAQDDNRSKALNAALSQIERQFGKGTVMRLGDAPRVMMPSVSTGSLSLDIALGIGGLPYGRIVEIFGPESSGKTTLTLSV
IAQAQKDGKTCAFIDAEHALDPSYAEKLGVNLDDLLVSQPDTGEQALEICDMLVRSGGVDVIIIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGHIKNANCMVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKQGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVIDLGVQCKLVDKAGAWYSYNGNKIGQGKANSAQFLEDNPEIMAEI
ETQIRAQLLTQPEPKQEKEEAPVATLSGVDDLGDDLL

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=354269 E4T21_RS17195 WP_149286201.1 3918120..3919193(-) (recA) [Halomonas binhaiensis strain Y2R2]
ATGGCCCAGGACGACAACCGCAGCAAGGCGTTGAACGCCGCTCTTTCCCAGATTGAGCGCCAATTCGGCAAGGGAACCGT
GATGCGCCTGGGTGATGCGCCGCGGGTGATGATGCCTTCTGTTTCCACCGGCTCCCTGAGTCTCGACATTGCCTTGGGCA
TCGGTGGACTGCCGTATGGCCGTATTGTCGAAATCTTCGGTCCGGAGTCTTCCGGCAAGACGACCCTGACCCTTTCTGTC
ATTGCCCAGGCCCAGAAGGACGGCAAGACCTGCGCGTTCATCGATGCCGAGCATGCGTTGGATCCCAGCTATGCCGAGAA
GCTGGGTGTCAACCTGGACGACCTGCTGGTGTCTCAGCCGGATACTGGCGAACAGGCCCTGGAAATCTGCGACATGCTGG
TACGTTCCGGCGGTGTCGATGTGATCATCATCGACTCGGTGGCGGCATTGACGCCACGCGCGGAAATCGAAGGCGAGATG
GGCGATTCCCATGTGGGCCTGCAGGCTCGCCTGATGTCCCAGGCTCTGCGCAAGATCACGGGCCACATCAAGAATGCCAA
TTGCATGGTGGTGTTCATCAACCAGATTCGCATGAAGATCGGGGTCATGTTTGGCAGCCCTGAGACCACGACCGGTGGTA
ATGCGCTGAAGTTCTATTCCAGCGTGCGCCTCGATATCCGTCGTACTGGCTCGGTCAAGCAGGGCGATGAGGTCACGGGC
AATGAAACCCGGGTCAAGGTGGTCAAGAACAAGGTGGCTCCCCCATTCCGCCAGGCCGAGTTCCAGATCCTCTACGGCAA
GGGTATTTACCATGCTGGAGAGGTCATTGACCTGGGGGTGCAATGCAAACTGGTCGACAAGGCGGGTGCGTGGTACAGCT
ACAACGGCAACAAGATCGGGCAGGGCAAGGCCAATTCTGCCCAGTTCCTCGAGGACAACCCCGAGATCATGGCCGAGATT
GAAACTCAGATTCGTGCTCAGTTGTTGACTCAGCCTGAGCCCAAGCAGGAAAAAGAGGAAGCACCGGTAGCCACGCTGTC
TGGTGTGGATGATCTGGGTGACGACCTGCTGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C1NMR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

81.902

91.317

0.748
  recA Acinetobacter baylyi ADP1

74.927

96.078

0.72
  recA Acinetobacter baumannii D1279779

75.535

91.597

0.692
  recA Vibrio cholerae strain A1552

70.201

97.759

0.686
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.201

97.759

0.686
  recA Neisseria gonorrhoeae MS11

72.446

90.476

0.655
  recA Neisseria gonorrhoeae MS11

72.446

90.476

0.655
  recA Neisseria gonorrhoeae strain FA1090

72.446

90.476

0.655
  recA Glaesserella parasuis strain SC1401

70.732

91.877

0.65
  recA Ralstonia pseudosolanacearum GMI1000

72.063

88.235

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.11

91.317

0.585
  recA Streptococcus mitis SK321

56.667

100

0.571
  recA Streptococcus mitis NCTC 12261

56.389

100

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

63.125

89.636

0.566
  recA Helicobacter pylori 26695

60.479

93.557

0.566
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

92.717

0.566
  recA Streptococcus pneumoniae R6

54.178

100

0.563
  recA Streptococcus pneumoniae Rx1

54.178

100

0.563
  recA Streptococcus pneumoniae D39

54.178

100

0.563
  recA Streptococcus pneumoniae TIGR4

54.178

100

0.563
  recA Streptococcus mutans UA159

58.48

95.798

0.56
  recA Helicobacter pylori strain NCTC11637

59.88

93.557

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

56.056

99.44

0.557
  recA Streptococcus pyogenes NZ131

58.232

91.877

0.535
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.514

90.476

0.529
  recA Lactococcus lactis subsp. cremoris KW2

56.79

90.756

0.515

Multiple sequence alignment