Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ADEG_RS03180 Genome accession   NC_013385
Coordinates   650677..651717 (+) Length   346 a.a.
NCBI ID   WP_015738654.1    Uniprot ID   C9RBZ9
Organism   Ammonifex degensii KC4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 645677..656717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADEG_RS03160 (Adeg_0624) - 645901..646443 (+) 543 WP_015738650.1 hypothetical protein -
  ADEG_RS03165 (Adeg_0625) - 646433..647935 (+) 1503 WP_015738651.1 AAA family ATPase -
  ADEG_RS03170 (Adeg_0626) - 647987..649234 (+) 1248 WP_015738652.1 competence/damage-inducible protein A -
  ADEG_RS03175 (Adeg_0627) - 649347..650579 (+) 1233 WP_015738653.1 RNA-guided endonuclease TnpB family protein -
  ADEG_RS03180 (Adeg_0628) recA 650677..651717 (+) 1041 WP_015738654.1 recombinase RecA Machinery gene
  ADEG_RS03185 (Adeg_0629) - 651714..652097 (-) 384 WP_015738655.1 hypothetical protein -
  ADEG_RS03190 (Adeg_0630) yedF 652113..652709 (-) 597 WP_015738656.1 sulfurtransferase-like selenium metabolism protein YedF -
  ADEG_RS03195 (Adeg_0631) - 652857..653312 (+) 456 WP_041458772.1 universal stress protein -
  ADEG_RS03200 (Adeg_0632) - 653332..653559 (+) 228 WP_015738658.1 DUF5652 family protein -
  ADEG_RS12410 (Adeg_0633) - 653758..654453 (+) 696 WP_015738659.1 DtxR family transcriptional regulator -
  ADEG_RS03210 (Adeg_0634) - 654455..654703 (+) 249 WP_015738660.1 FeoA domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37371.72 Da        Isoelectric Point: 5.8425

>NTDB_id=35412 ADEG_RS03180 WP_015738654.1 650677..651717(+) (recA) [Ammonifex degensii KC4]
MSDRQKMLETTLAQIERQFGKGAIMRLGEAASRFQVEVIPSGSIALDVALGIGGFPRGRVVEIFGPESSGKTTVALHAVA
EAQKMGGIAAFIDAEHALDPVYAQRVGVDVDNLLVSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPRAELEGEMGD
AHVGLQARLMSQALRKLTGVIAKSRTTAIFINQIREKVGAYGNPETTPGGRALKFYASVRLEVRKVDDIKRGTEKIGTRV
RARVVKNKLAPPFKQAEFDILFGEGISREGSLLDAALATKLITKTGSWYSYGDIRLGQGRENVREYLKEHPELFQEIENK
IRQLLQGGQAAPLVLSTSEGPEEEEG

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=35412 ADEG_RS03180 WP_015738654.1 650677..651717(+) (recA) [Ammonifex degensii KC4]
TTGAGCGACCGTCAAAAAATGCTCGAAACCACCCTGGCCCAGATAGAGCGCCAGTTCGGCAAGGGCGCCATAATGCGCCT
GGGCGAAGCAGCAAGCCGCTTCCAGGTGGAAGTAATCCCCTCCGGCTCCATAGCTTTGGACGTTGCCCTGGGCATAGGGG
GCTTTCCCCGGGGAAGAGTGGTGGAGATCTTCGGTCCTGAGTCCTCAGGGAAAACCACCGTGGCCCTGCACGCGGTGGCC
GAGGCCCAAAAAATGGGGGGTATAGCGGCGTTCATCGACGCCGAGCACGCCCTCGATCCCGTCTACGCCCAGAGGGTGGG
TGTTGACGTGGACAACTTGCTGGTGTCCCAGCCGGACACGGGGGAGCAGGCCCTGGAAATAGCAGAAGCCCTGGTCAGGA
GCGGCGCGGTGGACATCATCGTAGTGGACAGCGTAGCAGCCCTTGTCCCCCGGGCGGAGCTGGAAGGGGAGATGGGGGAT
GCCCACGTGGGATTGCAAGCGAGGCTCATGTCCCAGGCCCTGCGCAAGCTCACCGGGGTTATCGCCAAGTCTCGCACCAC
GGCCATATTCATAAACCAAATTCGGGAGAAGGTGGGGGCCTATGGCAACCCTGAAACCACTCCTGGCGGGCGGGCGCTGA
AATTCTATGCCTCCGTCCGGCTAGAGGTGCGGAAGGTTGACGACATCAAGCGAGGAACGGAAAAGATCGGGACGCGGGTG
CGGGCGAGGGTGGTCAAGAACAAGTTGGCCCCGCCCTTTAAGCAGGCGGAGTTCGACATCCTTTTCGGAGAGGGAATTTC
CCGGGAGGGAAGCTTACTGGATGCGGCCCTGGCTACCAAGCTGATAACCAAGACCGGCTCTTGGTACTCCTATGGCGACA
TTCGGCTGGGGCAGGGGCGGGAAAATGTGCGTGAGTATCTCAAGGAGCACCCGGAACTCTTCCAAGAGATCGAGAACAAA
ATACGGCAGCTACTCCAGGGCGGGCAGGCAGCTCCCTTGGTTCTTTCTACCTCCGAAGGTCCGGAAGAGGAAGAAGGCTA
G

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C9RBZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

67.284

93.642

0.63
  recA Latilactobacillus sakei subsp. sakei 23K

67.601

92.775

0.627
  recA Streptococcus mitis SK321

62.13

97.688

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.116

100

0.601
  recA Streptococcus pneumoniae Rx1

63.804

94.22

0.601
  recA Streptococcus pneumoniae D39

63.804

94.22

0.601
  recA Streptococcus pneumoniae R6

63.804

94.22

0.601
  recA Streptococcus pneumoniae TIGR4

63.804

94.22

0.601
  recA Streptococcus pyogenes NZ131

63.497

94.22

0.598
  recA Streptococcus mitis NCTC 12261

63.19

94.22

0.595
  recA Lactococcus lactis subsp. cremoris KW2

62.883

94.22

0.592
  recA Streptococcus mutans UA159

62.577

94.22

0.59
  recA Neisseria gonorrhoeae MS11

62.848

93.353

0.587
  recA Neisseria gonorrhoeae strain FA1090

62.848

93.353

0.587
  recA Neisseria gonorrhoeae MS11

62.848

93.353

0.587
  recA Ralstonia pseudosolanacearum GMI1000

64.423

90.173

0.581
  recA Vibrio cholerae strain A1552

57.849

99.422

0.575
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.849

99.422

0.575
  recA Acinetobacter baumannii D1279779

57.602

98.844

0.569
  recA Pseudomonas stutzeri DSM 10701

60.802

93.642

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.271

95.087

0.564
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.735

95.954

0.564
  recA Acinetobacter baylyi ADP1

60.185

93.642

0.564
  recA Glaesserella parasuis strain SC1401

56.851

99.133

0.564
  recA Helicobacter pylori strain NCTC11637

60.062

93.353

0.561
  recA Helicobacter pylori 26695

60.062

93.353

0.561

Multiple sequence alignment