Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RB2501_RS03080 Genome accession   NC_013222
Coordinates   686133..687140 (+) Length   335 a.a.
NCBI ID   WP_015753276.1    Uniprot ID   -
Organism   Robiginitalea biformata HTCC2501     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 681133..692140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB2501_RS03065 (RB2501_06435) - 682767..683249 (-) 483 WP_041326926.1 gliding motility lipoprotein GldH -
  RB2501_RS03070 (RB2501_06440) - 683242..684402 (-) 1161 WP_041326927.1 regulatory iron-sulfur-containing complex subunit RicT -
  RB2501_RS03075 (RB2501_06445) - 684577..685665 (-) 1089 WP_015753274.1 rhodanese-related sulfurtransferase -
  RB2501_RS03080 (RB2501_06455) recA 686133..687140 (+) 1008 WP_015753276.1 recombinase RecA Machinery gene
  RB2501_RS03085 (RB2501_06460) - 687224..687640 (+) 417 WP_148214279.1 hypothetical protein -
  RB2501_RS03090 (RB2501_06465) - 687685..688224 (+) 540 WP_015753278.1 RNA polymerase sigma factor -
  RB2501_RS03095 (RB2501_06470) - 688235..689776 (+) 1542 WP_015753279.1 outer membrane beta-barrel protein -
  RB2501_RS03100 (RB2501_06475) - 689773..690522 (-) 750 WP_015753280.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  RB2501_RS03105 (RB2501_06480) trpS 690612..691580 (+) 969 WP_015753281.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36293.61 Da        Isoelectric Point: 6.0759

>NTDB_id=35297 RB2501_RS03080 WP_015753276.1 686133..687140(+) (recA) [Robiginitalea biformata HTCC2501]
MSSEKDAKLKALKLTLDKLDKTYGKGTVMKMGDDVAQDVEVIPSGSLGLDVALGVGGYPRGRVVEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRFYAKNLGVDIDNLIISQPDHGEQALEIADNLIRSGAIDIIVVDSVAALTPKSEIEGE
MGDSKVGLHARLMSQALRKLTASISKTHCTVIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRSTQIKNTDGDV
QGNKTRVKVVKNKVAPPFRTVEFDIMYGEGISKVGEILDIGVDYEIIQKSGSWFSYGDTKLGQGRDAVKILLKDNPELLE
ELEEKIKEAIKAIKA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=35297 RB2501_RS03080 WP_015753276.1 686133..687140(+) (recA) [Robiginitalea biformata HTCC2501]
ATGAGCAGCGAAAAAGACGCCAAATTAAAGGCCCTGAAACTCACCCTGGACAAACTCGACAAGACCTATGGAAAGGGGAC
GGTCATGAAGATGGGGGACGATGTGGCACAGGATGTTGAAGTAATCCCGTCTGGTTCCCTCGGCCTGGATGTCGCGCTCG
GAGTGGGCGGGTACCCCAGGGGGCGCGTGGTGGAAATCTACGGCCCGGAATCCTCGGGAAAAACCACGCTGACCCTGCAT
GCCATTGCCGAGGCGCAAAAAGCCGGGGGCATCGCCGCCTTTATCGACGCAGAGCACGCGTTCGACCGGTTTTACGCCAA
AAACCTCGGGGTGGACATCGACAACCTGATTATCTCCCAGCCGGATCACGGGGAACAGGCGCTGGAAATTGCCGATAACC
TGATCCGCAGCGGCGCCATCGACATCATTGTGGTAGATTCCGTCGCGGCACTGACGCCCAAAAGCGAGATCGAAGGGGAA
ATGGGCGACTCCAAGGTTGGGCTGCACGCCCGGCTCATGTCCCAGGCCCTCCGGAAACTTACAGCTTCCATCAGCAAGAC
ACACTGTACGGTGATCTTTATCAACCAGCTCCGGGAAAAGATCGGGGTGATGTTCGGAAACCCGGAAACCACCACCGGGG
GGAATGCACTGAAATTTTACAGTTCCGTACGCCTGGATATCCGCCGCTCCACTCAGATTAAGAATACGGACGGGGATGTG
CAGGGGAACAAGACCCGGGTGAAAGTAGTCAAGAACAAAGTGGCCCCGCCCTTCCGCACGGTGGAATTCGACATCATGTA
CGGGGAAGGCATCTCCAAGGTGGGCGAAATCCTGGATATCGGCGTGGACTACGAGATTATCCAGAAAAGCGGCTCCTGGT
TCAGCTACGGGGACACGAAGCTCGGACAGGGTCGGGATGCCGTGAAGATCCTGCTCAAGGACAACCCGGAACTCCTGGAG
GAACTCGAGGAGAAAATCAAAGAGGCCATCAAGGCAATCAAGGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

76.786

100

0.77
  recA Neisseria gonorrhoeae strain FA1090

66.254

96.418

0.639
  recA Neisseria gonorrhoeae MS11

66.254

96.418

0.639
  recA Neisseria gonorrhoeae MS11

66.254

96.418

0.639
  recA Glaesserella parasuis strain SC1401

63.222

98.209

0.621
  recA Acinetobacter baylyi ADP1

64

97.015

0.621
  recA Ralstonia pseudosolanacearum GMI1000

66.774

92.537

0.618
  recA Bacillus subtilis subsp. subtilis str. 168

65.094

94.925

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

97.313

0.615
  recA Streptococcus pyogenes NZ131

62.27

97.313

0.606
  recA Streptococcus mitis NCTC 12261

63.043

96.119

0.606
  recA Streptococcus mitis SK321

63.043

96.119

0.606
  recA Helicobacter pylori 26695

62.346

96.716

0.603
  recA Helicobacter pylori strain NCTC11637

62.346

96.716

0.603
  recA Acinetobacter baumannii D1279779

62.539

96.418

0.603
  recA Latilactobacillus sakei subsp. sakei 23K

62.154

97.015

0.603
  recA Streptococcus mutans UA159

61.656

97.313

0.6
  recA Streptococcus pneumoniae Rx1

62.112

96.119

0.597
  recA Streptococcus pneumoniae D39

62.112

96.119

0.597
  recA Streptococcus pneumoniae R6

62.112

96.119

0.597
  recA Streptococcus pneumoniae TIGR4

62.112

96.119

0.597
  recA Pseudomonas stutzeri DSM 10701

62.187

95.522

0.594
  recA Vibrio cholerae strain A1552

61.3

96.418

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.3

96.418

0.591
  recA Lactococcus lactis subsp. cremoris KW2

60.991

96.418

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.587

99.701

0.564

Multiple sequence alignment