Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DTOX_RS15060 Genome accession   NC_013216
Coordinates   3299648..3300679 (-) Length   343 a.a.
NCBI ID   WP_015758547.1    Uniprot ID   C8W3R9
Organism   Desulfofarcimen acetoxidans DSM 771     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3294648..3305679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTOX_RS15035 (Dtox_3098) spoVS 3295037..3295297 (-) 261 WP_015758542.1 stage V sporulation protein SpoVS -
  DTOX_RS15040 (Dtox_3099) - 3295451..3296224 (-) 774 WP_015758543.1 TIGR00282 family metallophosphoesterase -
  DTOX_RS15045 (Dtox_3100) - 3296237..3296758 (-) 522 WP_169306030.1 hypothetical protein -
  DTOX_RS15050 (Dtox_3101) rny 3297014..3298549 (-) 1536 WP_015758545.1 ribonuclease Y -
  DTOX_RS15055 (Dtox_3102) - 3299161..3299619 (-) 459 WP_015758546.1 regulatory protein RecX -
  DTOX_RS15060 (Dtox_3103) recA 3299648..3300679 (-) 1032 WP_015758547.1 recombinase RecA Machinery gene
  DTOX_RS15065 (Dtox_3104) - 3300811..3302430 (-) 1620 WP_015758548.1 DEAD/DEAH box helicase -
  DTOX_RS15070 (Dtox_3105) - 3302435..3303697 (-) 1263 WP_015758549.1 competence/damage-inducible protein A -
  DTOX_RS15075 (Dtox_3106) - 3303830..3305311 (-) 1482 WP_015758550.1 AAA family ATPase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36918.28 Da        Isoelectric Point: 5.8877

>NTDB_id=35286 DTOX_RS15060 WP_015758547.1 3299648..3300679(-) (recA) [Desulfofarcimen acetoxidans DSM 771]
MQQDKQKALERALADIEKQFGKGAVMKLGESPAKNVEVISTGVLSLDIALGIGGVPRGRVVEIYGPESSGKTTVALHVVA
EAQKDGGMAAFVDAEHALDPTYAQKLGVDIENLLVSQPDTGEQALEIAEALVRSGAVDVIVVDSVAALVPRAEIEGDMGD
SHVGLQARLMSQALRKLTGVVSKSNCTIIFINQLREKVGVMFGNPETTPGGRALKFYSSIRLDVRKGEPIKQGADFTGNR
TKVKVVKNKMAPPFKQAEFDIMFGTGISREGTLLDVAVDLNIINKSGAWYSYNNERLGQGRENVKDLLKEKQEMAREIEQ
KVRALVNVAPQQPAGPEQSDLSV

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=35286 DTOX_RS15060 WP_015758547.1 3299648..3300679(-) (recA) [Desulfofarcimen acetoxidans DSM 771]
ATGCAGCAAGACAAGCAAAAAGCTTTGGAACGCGCTCTGGCCGATATTGAGAAGCAGTTCGGCAAAGGGGCTGTTATGAA
ACTTGGCGAGTCTCCGGCAAAGAATGTGGAGGTTATTTCCACAGGTGTTTTATCTCTTGATATTGCTCTTGGTATTGGTG
GTGTTCCCAGGGGCAGAGTTGTTGAGATATACGGGCCTGAGTCTTCCGGTAAAACAACTGTGGCGCTGCATGTAGTTGCC
GAAGCCCAGAAAGATGGGGGGATGGCAGCGTTTGTGGATGCGGAGCATGCCCTGGATCCGACTTATGCCCAAAAACTGGG
CGTAGATATTGAAAATTTGCTGGTTTCCCAGCCTGATACGGGTGAGCAGGCGCTGGAAATTGCCGAAGCTCTGGTGCGCA
GCGGGGCGGTTGATGTTATTGTGGTGGATTCAGTAGCCGCTCTGGTGCCCAGGGCGGAGATTGAAGGTGATATGGGTGAT
TCACATGTAGGTTTGCAGGCCCGTTTGATGTCGCAGGCCCTGCGCAAACTTACCGGTGTGGTCAGCAAATCCAACTGCAC
AATCATATTCATTAATCAACTGAGAGAAAAAGTAGGAGTAATGTTTGGCAATCCTGAGACAACTCCGGGGGGAAGGGCGC
TAAAGTTCTACTCGTCAATCAGGCTGGATGTGCGTAAAGGTGAGCCTATAAAACAGGGTGCTGATTTTACCGGTAATCGC
ACAAAAGTTAAAGTCGTGAAAAATAAGATGGCTCCGCCTTTTAAACAGGCAGAGTTTGACATTATGTTTGGAACCGGTAT
TTCCCGTGAAGGCACACTGCTGGATGTGGCTGTTGATCTCAATATTATTAATAAGAGCGGTGCCTGGTATTCTTATAATA
ATGAGCGCCTGGGCCAGGGCAGGGAAAATGTTAAGGATTTATTGAAAGAAAAGCAGGAGATGGCGCGGGAAATTGAACAA
AAGGTGCGGGCTCTGGTAAATGTGGCTCCGCAACAACCGGCCGGTCCGGAGCAAAGTGATTTGTCTGTGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C8W3R9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

70.625

93.294

0.659
  recA Neisseria gonorrhoeae MS11

67.173

95.918

0.644
  recA Neisseria gonorrhoeae MS11

67.173

95.918

0.644
  recA Neisseria gonorrhoeae strain FA1090

67.173

95.918

0.644
  recA Latilactobacillus sakei subsp. sakei 23K

66.159

95.627

0.633
  recA Streptococcus mutans UA159

66.667

94.461

0.63
  recA Streptococcus mitis SK321

62.757

99.417

0.624
  recA Streptococcus pyogenes NZ131

66.049

94.461

0.624
  recA Ralstonia pseudosolanacearum GMI1000

67.619

91.837

0.621
  recA Acinetobacter baylyi ADP1

62.463

99.417

0.621
  recA Streptococcus pneumoniae TIGR4

65.538

94.752

0.621
  recA Streptococcus pneumoniae D39

65.538

94.752

0.621
  recA Streptococcus pneumoniae Rx1

65.538

94.752

0.621
  recA Streptococcus pneumoniae R6

65.538

94.752

0.621
  recA Lactococcus lactis subsp. cremoris KW2

65.231

94.752

0.618
  recA Streptococcus mitis NCTC 12261

65.432

94.461

0.618
  recA Pseudomonas stutzeri DSM 10701

61.516

100

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.11

95.044

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.11

95.044

0.609
  recA Vibrio cholerae strain A1552

64.11

95.044

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.198

94.461

0.606
  recA Acinetobacter baumannii D1279779

64.396

94.169

0.606
  recA Glaesserella parasuis strain SC1401

61.243

98.542

0.604
  recA Helicobacter pylori strain NCTC11637

63.889

94.461

0.603
  recA Helicobacter pylori 26695

63.889

94.461

0.603
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

94.752

0.589

Multiple sequence alignment