Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GOM47_RS04465 Genome accession   NZ_CP046524
Coordinates   859946..861613 (+) Length   555 a.a.
NCBI ID   WP_235081182.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 854946..866613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS04435 (GOM47_04435) udk 855538..856176 (+) 639 WP_001181376.1 uridine kinase -
  GOM47_RS04440 (GOM47_04440) xseA 856305..857645 (+) 1341 WP_235081178.1 exodeoxyribonuclease VII large subunit -
  GOM47_RS04445 (GOM47_04445) - 857623..857835 (+) 213 WP_000043224.1 exodeoxyribonuclease VII small subunit -
  GOM47_RS04450 (GOM47_04450) - 857832..858707 (+) 876 WP_235081179.1 polyprenyl synthetase family protein -
  GOM47_RS04455 (GOM47_04455) - 858700..859515 (+) 816 WP_235081180.1 TlyA family RNA methyltransferase -
  GOM47_RS04460 (GOM47_04460) - 859508..859939 (+) 432 WP_235081181.1 arginine repressor -
  GOM47_RS04465 (GOM47_04465) recN 859946..861613 (+) 1668 WP_235081182.1 DNA repair protein RecN Machinery gene
  GOM47_RS04470 (GOM47_04470) - 861614..862342 (+) 729 WP_235081183.1 metallophosphoesterase family protein -
  GOM47_RS04475 (GOM47_04475) lepA 862421..864244 (+) 1824 WP_235081184.1 translation elongation factor 4 -
  GOM47_RS04480 (GOM47_04480) dprA/cilB/dalA 864412..865260 (+) 849 WP_235081185.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62740.14 Da        Isoelectric Point: 4.5517

>NTDB_id=352801 GOM47_RS04465 WP_235081182.1 859946..861613(+) (recN) [Streptococcus oralis strain SOT]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNLMLGARATTDVIRHGAPKAEIEGLFSVENSRSLQELF
EEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDQEELMRPQLHIQMLDEFGDAAFLELKQA
YQTSFDAYRKMRKQVLEVKKNQQEHKSRIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNYKNIADTLTNAYTMLDNEE
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDITKRLEDIIEDLDFDGNRLMQVENRLDLLNTITRKYGGTV
DDVLLYFAKITDEYNLLTGNNLSSEDMEAELKKLEINLVDLAGQLASARHDLAQQLEAEIKQELQDLYMEKAQFQVRFSK
SKFSREGNEAVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSTVRLLTLEERVEEVAKMLAGENVTEAALTQARELLQTRKK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=352801 GOM47_RS04465 WP_235081182.1 859946..861613(+) (recN) [Streptococcus oralis strain SOT]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATAGAGGCGATTTCCCTCAATTTTGAAAAGGGTATGACTGTTTT
GACTGGGGAAACGGGTGCCGGAAAGTCTATCATTATAGACGCTATGAATCTCATGTTGGGGGCTCGTGCAACGACAGATG
TTATTCGTCATGGTGCGCCAAAGGCGGAGATTGAAGGGCTTTTCTCTGTTGAGAATAGCCGTTCTTTACAAGAACTCTTT
GAAGAGCAAGGTTTAGAATTGGGTGATGAAATCATCATTCGTCGTGAAATTTTACAGAACGGGCGTAGCATCAGTCGAGT
CAATGGGCAGATGGTCAATCTTTCTGTCTTGCGCGCAATCGGCCAACATCTTGTCGATATTCATGGTCAACATGACCAAG
AAGAGTTAATGCGTCCACAACTTCATATCCAGATGCTGGATGAGTTTGGTGATGCCGCATTTTTGGAACTTAAACAAGCC
TATCAGACAAGCTTTGACGCCTATCGCAAAATGCGTAAACAAGTTCTGGAAGTCAAGAAAAACCAGCAGGAACACAAGTC
TCGCATTGAGATGTTGGAATTTCAAATGGCAGAGATTGAAGCAGCAAACTTGCAGGCTGGTGAAGACTTGGCTCTCAACC
AAGAACGAGATAAACTCCTCAATTACAAGAATATAGCAGACACCTTGACAAATGCCTACACCATGTTGGACAATGAGGAG
TTTTCTAGCCTAGCAAATGTCCGTTCCGCCATGAATGACATGGAAAGTGTTGAAGAATACGACCCTGAATACCGTGAAAT
TTCAAGTTCTCTATCAGAAACCTACTATGTTTTAGAAGATATTACCAAGCGTTTGGAAGATATTATTGAGGACTTGGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGCTTAGACCTTCTGAATACTATTACCCGTAAATACGGTGGGACTGTG
GACGATGTTTTGCTTTATTTTGCCAAGATTACGGATGAGTATAATCTTTTGACAGGAAATAACCTTTCCTCCGAAGACAT
GGAAGCAGAACTCAAGAAATTGGAAATTAATCTTGTTGATTTGGCAGGGCAGCTTGCATCTGCTCGCCATGACTTGGCCC
AGCAGCTAGAAGCTGAGATAAAACAAGAGTTGCAAGATCTTTATATGGAGAAGGCTCAATTTCAAGTTCGCTTTAGTAAG
AGCAAGTTCAGCCGTGAAGGAAATGAAGCAGTTGAGTTTTACATTTCAACCAACCCTGGTGAAGACTTTAAACCTTTGGT
CAAGGTGGCGTCTGGAGGAGAACTGTCTCGCCTCATGCTAGCTATTAAATCCGCCTTTTCTCGTAAAGAAGGCAAGACTA
GTATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCCCAAGCTATTGCTCAGAAGATTCATAAGATTGGC
CAGCATGGTCAGGTTCTTGCTATTTCTCACCTTCCACAAGTAATTGCCATCGCGGATTATCAATTCTTTATTGAGAAGAT
TAGCGATGAGCACTCAACGGTGTCGACGGTTCGTCTCTTGACTTTAGAAGAGCGAGTAGAGGAAGTCGCTAAAATGTTGG
CTGGGGAAAATGTAACCGAAGCGGCCCTTACCCAAGCGAGAGAATTATTGCAAACGAGGAAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.782

100

0.438

Multiple sequence alignment