Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E3O41_RS09400 Genome accession   NZ_CP038256
Coordinates   1969659..1970714 (-) Length   351 a.a.
NCBI ID   WP_067026125.1    Uniprot ID   A0A1B9NB66
Organism   Microbacterium sediminis strain YLB-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1964659..1975714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3O41_RS09375 (E3O41_09375) - 1964679..1965317 (+) 639 WP_067026114.1 methyltransferase -
  E3O41_RS09380 (E3O41_09380) dapF 1965348..1966226 (-) 879 WP_067026116.1 diaminopimelate epimerase -
  E3O41_RS09385 (E3O41_09385) miaA 1966264..1967175 (-) 912 WP_067026118.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  E3O41_RS09390 (E3O41_09390) miaB 1967181..1968737 (-) 1557 WP_067026121.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  E3O41_RS09395 (E3O41_09395) - 1968782..1969654 (-) 873 WP_067026123.1 regulatory protein RecX -
  E3O41_RS09400 (E3O41_09400) recA 1969659..1970714 (-) 1056 WP_067026125.1 recombinase RecA Machinery gene
  E3O41_RS09405 (E3O41_09405) - 1970956..1971174 (-) 219 WP_067026127.1 DUF3046 domain-containing protein -
  E3O41_RS09410 (E3O41_09410) - 1971179..1971487 (-) 309 WP_067026129.1 helix-turn-helix transcriptional regulator -
  E3O41_RS09415 (E3O41_09415) - 1971604..1972128 (-) 525 WP_067026131.1 CinA family protein -
  E3O41_RS09420 (E3O41_09420) pgsA 1972125..1972700 (-) 576 WP_067026133.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  E3O41_RS09425 (E3O41_09425) - 1972713..1975448 (-) 2736 WP_067026135.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37517.77 Da        Isoelectric Point: 5.8252

>NTDB_id=352801 E3O41_RS09400 WP_067026125.1 1969659..1970714(-) (recA) [Microbacterium sediminis strain YLB-01]
MPSAADREKALESALAQIDRQFGKGSIMRLGSDERAPVEVIPTGSIALDVALGVGGLPRGRIIEIYGPESSGKTTLTLHA
IANVQRAGGIAAFVDAEHALDPDYAKKLGVDIDQLLVSQPDTGEQALEIADMLIRSGAIDLVVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTKTTAIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGSEAVG
NRTRVKVVKNKMAPPFKQAEFDILYGTGISREGSLIDFGVEHGIVKKSGSWFTYDGDQLGQGKENARNFLLNNPDIANEI
ETKIKVKLGVGQRGDLATEAAVDEVAARRTA

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=352801 E3O41_RS09400 WP_067026125.1 1969659..1970714(-) (recA) [Microbacterium sediminis strain YLB-01]
ATGCCATCAGCAGCAGACCGCGAGAAGGCCCTCGAGTCGGCACTCGCCCAGATCGATCGGCAGTTCGGAAAGGGCTCGAT
CATGCGCCTGGGTAGCGACGAGCGCGCCCCGGTCGAGGTCATCCCGACGGGCTCCATCGCCCTCGACGTCGCGCTCGGCG
TCGGCGGCCTGCCCCGCGGCCGCATCATCGAGATCTACGGACCGGAGTCGTCGGGTAAGACCACGCTCACGCTCCACGCG
ATCGCCAACGTGCAGCGCGCCGGCGGGATCGCGGCGTTCGTCGACGCGGAGCACGCGCTCGACCCCGACTACGCCAAGAA
GCTCGGCGTCGACATCGACCAGCTCCTCGTCTCGCAGCCCGACACGGGTGAGCAGGCGCTCGAGATCGCCGACATGCTGA
TCCGCTCGGGCGCCATCGACCTCGTCGTCATCGACTCCGTCGCCGCGCTCGTGCCCCGCGCCGAGATCGAGGGCGAGATG
GGCGACTCGCACGTCGGCCTCCAGGCGCGCCTCATGTCGCAGGCGCTGCGCAAGCTGACCGGTGGCCTGAACCAGACCAA
GACCACCGCCATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGTTCTTCGGCTCGCCCGAGACCACCGCGGGTGGCA
AGGCGCTGAAGTTCTACGCCTCGGTCCGCCTGGACATCCGGCGCATCGAGACGCTCAAGGACGGCAGCGAGGCGGTCGGA
AACCGCACGCGCGTCAAGGTCGTCAAGAACAAGATGGCTCCGCCGTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCAC
CGGCATCTCACGCGAGGGCAGCCTGATCGACTTCGGCGTGGAGCACGGCATCGTCAAGAAGTCGGGCTCGTGGTTCACGT
ACGACGGCGATCAGCTTGGCCAGGGCAAGGAGAACGCGCGCAACTTCCTGCTCAACAACCCCGACATCGCCAACGAGATC
GAGACGAAGATCAAGGTGAAGCTGGGCGTCGGCCAGCGCGGAGACCTGGCCACCGAGGCCGCGGTCGACGAGGTGGCGGC
TCGCCGCACGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9NB66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

65.217

98.291

0.641
  recA Neisseria gonorrhoeae strain FA1090

65.217

98.291

0.641
  recA Neisseria gonorrhoeae MS11

65.217

98.291

0.641
  recA Pseudomonas stutzeri DSM 10701

65.68

96.296

0.632
  recA Bacillus subtilis subsp. subtilis str. 168

66.364

94.017

0.624
  recA Ralstonia pseudosolanacearum GMI1000

66.667

93.162

0.621
  recA Vibrio cholerae strain A1552

66.563

92.023

0.613
  recA Acinetobacter baumannii D1279779

66.563

92.023

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.563

92.023

0.613
  recA Acinetobacter baylyi ADP1

66.254

92.023

0.61
  recA Streptococcus mitis SK321

61.272

98.575

0.604
  recA Streptococcus mitis NCTC 12261

60.983

98.575

0.601
  recA Lactococcus lactis subsp. cremoris KW2

63.636

94.017

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.11

92.877

0.595
  recA Streptococcus pneumoniae D39

62.727

94.017

0.59
  recA Streptococcus pneumoniae TIGR4

62.727

94.017

0.59
  recA Streptococcus pneumoniae R6

62.727

94.017

0.59
  recA Streptococcus pneumoniae Rx1

62.727

94.017

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

63.692

92.593

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.614

93.732

0.587
  recA Helicobacter pylori strain NCTC11637

63.077

92.593

0.584
  recA Helicobacter pylori 26695

63.077

92.593

0.584
  recA Glaesserella parasuis strain SC1401

63.354

91.738

0.581
  recA Streptococcus pyogenes NZ131

61.89

93.447

0.578
  recA Streptococcus mutans UA159

61.398

93.732

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.485

94.017

0.55

Multiple sequence alignment