Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LGG_RS04265 | Genome accession | NC_013198 |
| Coordinates | 894081..895133 (+) | Length | 350 a.a. |
| NCBI ID | WP_005688187.1 | Uniprot ID | A0A5P5ZCT3 |
| Organism | Lacticaseibacillus rhamnosus GG | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 884872..933759 | 894081..895133 | within | 0 |
Gene organization within MGE regions
Location: 884872..933759
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGG_RS04230 (LGG_00882) | - | 885370..887670 (+) | 2301 | WP_014569347.1 | DNA translocase FtsK | - |
| LGG_RS04235 (LGG_00883) | yfmF | 887679..888941 (+) | 1263 | WP_014569348.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| LGG_RS04240 (LGG_00884) | yfmH | 888938..890230 (+) | 1293 | WP_014569349.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| LGG_RS04245 (LGG_00885) | ymfI | 890230..890958 (+) | 729 | WP_014569350.1 | elongation factor P 5-aminopentanone reductase | - |
| LGG_RS04250 (LGG_00886) | - | 891045..891980 (+) | 936 | WP_005688668.1 | helix-turn-helix domain-containing protein | - |
| LGG_RS04255 (LGG_00887) | pgsA | 891977..892567 (+) | 591 | WP_014569351.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| LGG_RS04260 (LGG_00888) | cinA | 892788..894029 (+) | 1242 | WP_014569352.1 | competence/damage-inducible protein A | Machinery gene |
| LGG_RS04265 (LGG_00889) | recA | 894081..895133 (+) | 1053 | WP_005688187.1 | recombinase RecA | Machinery gene |
| LGG_RS04270 (LGG_00892) | rny | 895758..897329 (+) | 1572 | WP_005684479.1 | ribonuclease Y | - |
| LGG_RS04275 (LGG_00893) | - | 897418..898074 (-) | 657 | WP_029943817.1 | YigZ family protein | - |
| LGG_RS04280 (LGG_00894) | - | 898102..899367 (+) | 1266 | WP_014569356.1 | DEAD/DEAH box helicase | - |
| LGG_RS04285 (LGG_00895) | - | 899526..900044 (+) | 519 | WP_005688681.1 | ComF family protein | - |
| LGG_RS04290 (LGG_00896) | hpf | 900236..900793 (+) | 558 | WP_005684485.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| LGG_RS04295 (LGG_00899) | secA | 901376..903739 (+) | 2364 | WP_005684487.1 | preprotein translocase subunit SecA | - |
| LGG_RS04300 (LGG_00900) | prfB | 903881..904997 (+) | 1117 | WP_154241369.1 | peptide chain release factor 2 | - |
| LGG_RS04305 (LGG_00901) | ftsE | 905074..905760 (+) | 687 | WP_005684489.1 | cell division ATP-binding protein FtsE | - |
| LGG_RS04310 (LGG_00902) | ftsX | 905750..906637 (+) | 888 | WP_005684490.1 | permease-like cell division protein FtsX | - |
| LGG_RS16065 | - | 906715..906852 (+) | 138 | WP_014569359.1 | hypothetical protein | - |
| LGG_RS04315 (LGG_00903) | - | 906908..908005 (+) | 1098 | WP_014569360.1 | PDZ domain-containing protein | - |
| LGG_RS04320 (LGG_00904) | - | 908002..908706 (+) | 705 | WP_005688690.1 | response regulator transcription factor | - |
| LGG_RS04325 (LGG_00905) | pnpS | 908699..910366 (+) | 1668 | WP_014569361.1 | two-component system histidine kinase PnpS | - |
| LGG_RS04330 (LGG_00906) | - | 910456..911322 (+) | 867 | WP_005684496.1 | phosphate ABC transporter substrate-binding protein PstS family protein | - |
| LGG_RS04335 (LGG_00907) | pstC | 911470..912393 (+) | 924 | WP_005684497.1 | phosphate ABC transporter permease subunit PstC | - |
| LGG_RS04340 (LGG_00908) | pstA | 912390..913274 (+) | 885 | WP_005684499.1 | phosphate ABC transporter permease PstA | - |
| LGG_RS04345 (LGG_00909) | pstB | 913345..914163 (+) | 819 | WP_005713669.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| LGG_RS04350 (LGG_00910) | pstB | 914173..914937 (+) | 765 | WP_005684501.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| LGG_RS04355 (LGG_00911) | phoU | 914948..915625 (+) | 678 | WP_005684502.1 | phosphate signaling complex protein PhoU | - |
| LGG_RS04360 (LGG_00912) | - | 915879..916757 (-) | 879 | WP_048653158.1 | IS3 family transposase | - |
| LGG_RS04365 (LGG_00913) | - | 916754..917482 (-) | 729 | WP_014569363.1 | helix-turn-helix domain-containing protein | - |
| LGG_RS04370 (LGG_00914) | liaX | 918051..919541 (+) | 1491 | WP_014569364.1 | daptomycin-sensing surface protein LiaX | - |
| LGG_RS04375 (LGG_00915) | - | 919553..919813 (+) | 261 | WP_005688700.1 | hypothetical protein | - |
| LGG_RS04380 (LGG_00916) | - | 919816..920151 (+) | 336 | WP_005684507.1 | phage holin family protein | - |
| LGG_RS04385 (LGG_00917) | hprK | 920418..921377 (+) | 960 | WP_005684508.1 | HPr(Ser) kinase/phosphatase | - |
| LGG_RS04390 (LGG_00918) | lgt | 921379..922206 (+) | 828 | WP_014569365.1 | prolipoprotein diacylglyceryl transferase | - |
| LGG_RS04395 (LGG_00919) | - | 922217..923272 (+) | 1056 | WP_014569366.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| LGG_RS04400 (LGG_00920) | trxB | 923338..924285 (+) | 948 | WP_005684511.1 | thioredoxin-disulfide reductase | - |
| LGG_RS04405 (LGG_00921) | - | 924537..926264 (+) | 1728 | WP_014569367.1 | phospho-sugar mutase | - |
| LGG_RS04410 (LGG_00922) | - | 926724..927371 (+) | 648 | WP_014569368.1 | YfbR-like 5'-deoxynucleotidase | - |
| LGG_RS04415 (LGG_00923) | uvrB | 927642..929657 (+) | 2016 | WP_005688715.1 | excinuclease ABC subunit UvrB | - |
| LGG_RS04420 (LGG_00924) | uvrA | 929838..932732 (+) | 2895 | WP_014569369.1 | excinuclease ABC subunit UvrA | - |
| LGG_RS04425 (LGG_00925) | - | 932934..933473 (+) | 540 | WP_014569370.1 | HdeD family acid-resistance protein | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37586.87 Da Isoelectric Point: 5.5040
>NTDB_id=35178 LGG_RS04265 WP_005688187.1 894081..895133(+) (recA) [Lacticaseibacillus rhamnosus GG]
MAETERQEALATALKKIEKNFGKGAIMRMGDKVETRVSAVSSGSLAIDDALGVGGLPRGRIVEIYGPESSGKTTVALHAV
AMVQQHGGTAAYIDAENAMDPKYAAALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGAINKTKTIALFINQIREKVGIVFGNPEITPGGRALKFYATVRMEVRRSEQIKNGADIIGN
RTKIKVVKNKVAPPFKTAIVDIMYGQGISQSGELVDMAVEKDIIEKAGSWYAYQGERIGQGREHAKSYLETHEELRRTIE
KQVRLAYGMSPDHVIDQADIETDTTTSAAS
MAETERQEALATALKKIEKNFGKGAIMRMGDKVETRVSAVSSGSLAIDDALGVGGLPRGRIVEIYGPESSGKTTVALHAV
AMVQQHGGTAAYIDAENAMDPKYAAALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGAINKTKTIALFINQIREKVGIVFGNPEITPGGRALKFYATVRMEVRRSEQIKNGADIIGN
RTKIKVVKNKVAPPFKTAIVDIMYGQGISQSGELVDMAVEKDIIEKAGSWYAYQGERIGQGREHAKSYLETHEELRRTIE
KQVRLAYGMSPDHVIDQADIETDTTTSAAS
Nucleotide
Download Length: 1053 bp
>NTDB_id=35178 LGG_RS04265 WP_005688187.1 894081..895133(+) (recA) [Lacticaseibacillus rhamnosus GG]
ATGGCAGAAACCGAACGACAGGAAGCATTGGCAACGGCGTTAAAGAAGATTGAGAAGAATTTTGGCAAAGGGGCCATTAT
GCGGATGGGGGACAAAGTGGAGACACGCGTTTCTGCTGTTTCCAGCGGATCACTTGCAATTGATGATGCACTTGGTGTTG
GTGGGCTGCCACGTGGACGAATTGTTGAAATCTATGGTCCGGAAAGTTCCGGGAAAACGACTGTGGCCTTGCATGCAGTT
GCCATGGTTCAGCAACACGGTGGCACGGCCGCTTATATTGATGCTGAAAATGCCATGGATCCCAAATATGCGGCGGCACT
TGGCGTCAATATTGATGAGCTGTTGCTTTCACAGCCGGATACCGGTGAACAAGGATTAGAAATTGCCGATGAGCTGGTTG
CATCGGGCGCCATTGATATTTTAGTGGTTGATTCAGTGGCAGCTCTGGTACCGCGCGCAGAAATTGAAGGGGACATGGGT
GATGCACACGTTGGGTTACAGGCACGGCTAATGTCACAGGCCTTACGAAAGTTGTCTGGGGCGATCAATAAGACCAAAAC
AATTGCCTTGTTCATTAACCAGATCCGGGAAAAAGTCGGCATTGTATTCGGCAATCCTGAAATTACGCCAGGTGGTCGGG
CGCTGAAATTTTATGCTACTGTGCGTATGGAAGTGCGCCGTTCCGAGCAGATCAAAAACGGTGCCGATATTATTGGCAAT
CGCACCAAAATCAAAGTGGTTAAAAATAAAGTTGCACCGCCGTTTAAGACTGCCATTGTTGATATTATGTATGGTCAAGG
CATTTCCCAAAGCGGTGAACTTGTCGACATGGCGGTTGAAAAAGACATCATTGAAAAGGCGGGTTCATGGTATGCCTACC
AAGGCGAGCGCATTGGTCAAGGACGTGAGCACGCTAAAAGCTATCTTGAAACGCATGAGGAGCTGCGCCGAACCATTGAA
AAACAAGTCCGGCTTGCTTATGGAATGTCGCCGGATCACGTTATCGATCAAGCAGACATAGAGACAGATACTACCACATC
TGCCGCATCATGA
ATGGCAGAAACCGAACGACAGGAAGCATTGGCAACGGCGTTAAAGAAGATTGAGAAGAATTTTGGCAAAGGGGCCATTAT
GCGGATGGGGGACAAAGTGGAGACACGCGTTTCTGCTGTTTCCAGCGGATCACTTGCAATTGATGATGCACTTGGTGTTG
GTGGGCTGCCACGTGGACGAATTGTTGAAATCTATGGTCCGGAAAGTTCCGGGAAAACGACTGTGGCCTTGCATGCAGTT
GCCATGGTTCAGCAACACGGTGGCACGGCCGCTTATATTGATGCTGAAAATGCCATGGATCCCAAATATGCGGCGGCACT
TGGCGTCAATATTGATGAGCTGTTGCTTTCACAGCCGGATACCGGTGAACAAGGATTAGAAATTGCCGATGAGCTGGTTG
CATCGGGCGCCATTGATATTTTAGTGGTTGATTCAGTGGCAGCTCTGGTACCGCGCGCAGAAATTGAAGGGGACATGGGT
GATGCACACGTTGGGTTACAGGCACGGCTAATGTCACAGGCCTTACGAAAGTTGTCTGGGGCGATCAATAAGACCAAAAC
AATTGCCTTGTTCATTAACCAGATCCGGGAAAAAGTCGGCATTGTATTCGGCAATCCTGAAATTACGCCAGGTGGTCGGG
CGCTGAAATTTTATGCTACTGTGCGTATGGAAGTGCGCCGTTCCGAGCAGATCAAAAACGGTGCCGATATTATTGGCAAT
CGCACCAAAATCAAAGTGGTTAAAAATAAAGTTGCACCGCCGTTTAAGACTGCCATTGTTGATATTATGTATGGTCAAGG
CATTTCCCAAAGCGGTGAACTTGTCGACATGGCGGTTGAAAAAGACATCATTGAAAAGGCGGGTTCATGGTATGCCTACC
AAGGCGAGCGCATTGGTCAAGGACGTGAGCACGCTAAAAGCTATCTTGAAACGCATGAGGAGCTGCGCCGAACCATTGAA
AAACAAGTCCGGCTTGCTTATGGAATGTCGCCGGATCACGTTATCGATCAAGCAGACATAGAGACAGATACTACCACATC
TGCCGCATCATGA
Similar proteins
Only experimentally validated proteins are listed.