Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E3U44_RS17595 Genome accession   NZ_CP038033
Coordinates   3733243..3734271 (-) Length   342 a.a.
NCBI ID   WP_134359372.1    Uniprot ID   A0A4P7C331
Organism   Nitrosococcus wardiae strain D1FHS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3728243..3739271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U44_RS17575 (E3U44_17575) csrA 3728293..3728550 (-) 258 WP_134359368.1 carbon storage regulator CsrA -
  E3U44_RS17580 (E3U44_17580) - 3728810..3730051 (-) 1242 WP_134359369.1 aspartate kinase -
  E3U44_RS17585 (E3U44_17585) alaS 3730136..3732757 (-) 2622 WP_134359370.1 alanine--tRNA ligase -
  E3U44_RS17590 (E3U44_17590) - 3732782..3733234 (-) 453 WP_134359371.1 regulatory protein RecX -
  E3U44_RS17595 (E3U44_17595) recA 3733243..3734271 (-) 1029 WP_134359372.1 recombinase RecA Machinery gene
  E3U44_RS17600 (E3U44_17600) thpR 3734378..3734917 (-) 540 WP_206054837.1 RNA 2',3'-cyclic phosphodiesterase -
  E3U44_RS17605 (E3U44_17605) pncC 3734895..3735383 (-) 489 WP_134359373.1 nicotinamide-nucleotide amidase -
  E3U44_RS17610 (E3U44_17610) mutS 3735648..3738230 (+) 2583 WP_134359374.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36550.88 Da        Isoelectric Point: 5.8893

>NTDB_id=351663 E3U44_RS17595 WP_134359372.1 3733243..3734271(-) (recA) [Nitrosococcus wardiae strain D1FHS]
MDENRKKALGAALSQIEKQFGKGAVMRLGDASTVRGVEVISTGSLGLDIALGVGGLPRGRVVEIFGPEASGKTTLALQVV
AEAQKVGGTAAFVDAEHALDPQYAEKLGVGVNDLLVSQPDTGEQALEIADMLVRSGAVDVVVIDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTANIKRSNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGSLKKGEEIIGN
ETRVKIVKNKMAPPFKQISFDILYGSGVSREGEIIDLGVQEGLVQKTGAWYSYNGDRIGQGRDNVRQFLKEHQELAQGIE
ASIRERLLPSKAALAEVEEVEA

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=351663 E3U44_RS17595 WP_134359372.1 3733243..3734271(-) (recA) [Nitrosococcus wardiae strain D1FHS]
ATGGACGAAAACCGGAAAAAAGCGCTGGGAGCTGCGCTTTCACAGATTGAGAAGCAGTTTGGCAAAGGCGCGGTAATGCG
TCTCGGGGATGCCAGCACCGTACGCGGGGTTGAGGTAATTTCTACGGGCTCTCTAGGGCTTGATATCGCCCTCGGAGTGG
GAGGATTGCCGCGAGGCCGCGTGGTTGAAATCTTTGGACCAGAGGCCTCAGGCAAGACCACTTTAGCTCTGCAAGTTGTT
GCAGAAGCCCAGAAGGTGGGAGGGACAGCGGCTTTTGTGGACGCCGAACACGCCCTGGATCCTCAGTATGCTGAGAAATT
AGGGGTTGGTGTTAATGATCTTCTTGTTTCCCAACCGGATACGGGGGAGCAGGCACTAGAGATTGCCGATATGCTGGTGC
GCTCGGGGGCGGTGGATGTGGTTGTGATAGACTCGGTGGCTGCTCTGACCCCCAAAGCGGAGATTGAGGGAGAAATGGGC
GATTCCCATGTAGGCTTGCAAGCCAGGTTGATGTCCCAGGCCCTGCGCAAGCTTACCGCTAATATTAAGCGCTCCAATAC
ACTGGTCGTTTTTATTAACCAGATTCGGATGAAGATTGGAGTGATGTTTGGTAGCCCGGAGACAACCACCGGTGGTAACG
CGCTCAAATTTTATGCTTCTGTGCGTTTGGATATTCGTCGAGTGGGCTCCCTCAAAAAAGGGGAGGAGATCATCGGTAAC
GAAACCCGGGTGAAAATCGTTAAGAATAAGATGGCACCGCCTTTCAAACAAATCTCCTTCGACATCCTTTATGGGAGTGG
AGTTTCCCGGGAAGGAGAGATTATCGATCTGGGAGTCCAGGAGGGACTTGTCCAAAAGACGGGCGCTTGGTACAGCTATA
ATGGGGATCGGATTGGTCAGGGCAGGGATAATGTGCGTCAATTTCTCAAGGAACATCAAGAGCTCGCCCAGGGCATTGAA
GCCAGTATCCGGGAGAGGCTCTTGCCGAGCAAAGCGGCATTGGCAGAGGTTGAGGAGGTGGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7C331

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

76.147

95.614

0.728
  recA Acinetobacter baylyi ADP1

72.012

100

0.722
  recA Pseudomonas stutzeri DSM 10701

73.494

97.076

0.713
  recA Acinetobacter baumannii D1279779

72.727

96.491

0.702
  recA Neisseria gonorrhoeae MS11

73.148

94.737

0.693
  recA Neisseria gonorrhoeae MS11

73.148

94.737

0.693
  recA Neisseria gonorrhoeae strain FA1090

73.148

94.737

0.693
  recA Vibrio cholerae strain A1552

71.037

95.906

0.681
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.037

95.906

0.681
  recA Glaesserella parasuis strain SC1401

68.308

95.029

0.649
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

96.784

0.623
  recA Bacillus subtilis subsp. subtilis str. 168

64.087

94.444

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.11

95.906

0.605
  recA Helicobacter pylori 26695

62.5

95.906

0.599
  recA Helicobacter pylori strain NCTC11637

62.195

95.906

0.596
  recA Streptococcus mutans UA159

60.123

95.322

0.573
  recA Streptococcus pneumoniae R6

57.647

99.415

0.573
  recA Streptococcus pneumoniae TIGR4

57.647

99.415

0.573
  recA Streptococcus pneumoniae Rx1

57.647

99.415

0.573
  recA Streptococcus pneumoniae D39

57.647

99.415

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

60.559

94.152

0.57
  recA Streptococcus pyogenes NZ131

58.663

96.199

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.716

95.614

0.561
  recA Lactococcus lactis subsp. cremoris KW2

59.259

94.737

0.561
  recA Streptococcus mitis NCTC 12261

57.716

94.737

0.547
  recA Streptococcus mitis SK321

57.716

94.737

0.547

Multiple sequence alignment