Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   APRE_RS03240 Genome accession   NC_013171
Coordinates   719537..720580 (+) Length   347 a.a.
NCBI ID   WP_015777570.1    Uniprot ID   C7RGP9
Organism   Anaerococcus prevotii DSM 20548     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 714537..725580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APRE_RS03230 (Apre_0616) - 716470..718782 (+) 2313 WP_015777568.1 DNA translocase FtsK -
  APRE_RS03235 (Apre_0617) pgsA 718769..719299 (+) 531 WP_015777569.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  APRE_RS03240 (Apre_0618) recA 719537..720580 (+) 1044 WP_015777570.1 recombinase RecA Machinery gene
  APRE_RS03245 (Apre_0619) - 720630..721667 (-) 1038 WP_015777571.1 DNA polymerase IV -
  APRE_RS03250 (Apre_0620) - 721754..721999 (+) 246 WP_015777572.1 RNA-binding S4 domain-containing protein -
  APRE_RS03255 (Apre_0621) - 721992..722309 (+) 318 WP_015777573.1 FtsB family cell division protein -
  APRE_RS03260 (Apre_0622) tilS 722293..723663 (+) 1371 WP_015777574.1 tRNA lysidine(34) synthetase TilS -
  APRE_RS03265 (Apre_0623) hpt 723653..724222 (+) 570 WP_015777575.1 hypoxanthine phosphoribosyltransferase -
  APRE_RS03270 (Apre_0624) - 724257..724748 (+) 492 WP_015777576.1 DUF986 family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37799.04 Da        Isoelectric Point: 4.8005

>NTDB_id=35115 APRE_RS03240 WP_015777570.1 719537..720580(+) (recA) [Anaerococcus prevotii DSM 20548]
MDKDKQKALDQAFKNIEKKYGKGAIMKMGEAPRVSVSAIPTGAVNLDIALGIGGIPRGRVVEIFGPESSGKTTLALHIVA
EDQKQDQTCAFIDAEHALDAEYAENLGVDIDNLILSQPDTGEQGLDIAESLVRSGAVDLIVIDSVAALVPRAEIEGEMGD
SHVGLQARLMSQALRRLTGVIAKSNTTVIFINQLREKVGVMFGSPETTPGGRALKFYSSVRLDIRRIKTITQGDNSIGSR
TRVKVVKNKVAPPFKVVEFDIMYGKGISKSGVLLDTAVDMDIVDKAGSWFSYKDEKLGQGRENVKDLLEENPELMAQIDA
EVRKSIIQAQEDGEENTEEDKKEEEKK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=35115 APRE_RS03240 WP_015777570.1 719537..720580(+) (recA) [Anaerococcus prevotii DSM 20548]
ATGGATAAAGATAAGCAAAAGGCCTTAGACCAGGCTTTTAAAAATATAGAGAAAAAATACGGTAAGGGAGCTATAATGAA
GATGGGTGAAGCTCCTAGAGTTTCAGTATCTGCTATTCCAACTGGAGCAGTCAATCTCGATATAGCTTTAGGTATCGGCG
GAATTCCTAGAGGAAGAGTAGTTGAAATTTTTGGACCTGAATCATCCGGTAAGACAACCCTTGCCCTTCATATAGTTGCA
GAAGATCAAAAGCAAGATCAGACCTGTGCTTTTATCGATGCCGAGCACGCCCTAGATGCAGAATATGCAGAAAACTTGGG
AGTTGATATAGATAACCTAATCCTCTCTCAACCAGATACTGGAGAGCAAGGTCTGGATATAGCTGAAAGTCTTGTAAGAA
GTGGAGCGGTTGACCTAATAGTAATCGACTCAGTTGCAGCCCTTGTCCCTAGAGCAGAAATCGAAGGAGAGATGGGTGAT
AGCCACGTCGGTCTTCAAGCGAGACTTATGAGTCAAGCCCTTAGAAGACTAACCGGTGTAATTGCAAAATCAAACACAAC
AGTGATTTTTATCAACCAATTAAGAGAAAAAGTCGGAGTTATGTTTGGATCTCCTGAGACAACACCAGGTGGTCGTGCCC
TTAAGTTCTACTCATCTGTAAGACTTGACATCAGAAGGATAAAGACAATAACCCAAGGAGATAATTCTATAGGATCAAGA
ACTAGGGTTAAGGTTGTCAAAAACAAGGTAGCTCCTCCATTCAAGGTAGTAGAATTTGATATCATGTATGGTAAGGGAAT
TTCTAAATCTGGAGTATTGCTCGATACGGCTGTAGATATGGACATAGTTGATAAGGCAGGATCTTGGTTTTCTTACAAGG
ACGAAAAGCTCGGCCAAGGTAGGGAGAATGTCAAAGACCTCTTAGAAGAAAATCCAGAACTTATGGCCCAAATCGATGCA
GAGGTTAGAAAAAGCATAATCCAAGCCCAAGAGGATGGAGAGGAAAATACAGAAGAAGACAAAAAAGAAGAAGAAAAGAA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C7RGP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae R6

62

100

0.625
  recA Streptococcus pneumoniae TIGR4

62

100

0.625
  recA Streptococcus pneumoniae Rx1

62

100

0.625
  recA Streptococcus pneumoniae D39

62

100

0.625
  recA Streptococcus mitis SK321

62.791

99.135

0.622
  recA Streptococcus mitis NCTC 12261

62.5

99.135

0.62
  recA Streptococcus mutans UA159

61.494

100

0.617
  recA Latilactobacillus sakei subsp. sakei 23K

65.337

93.948

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

65.732

92.507

0.608
  recA Acinetobacter baylyi ADP1

61.159

99.424

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.765

97.983

0.605
  recA Neisseria gonorrhoeae MS11

63.889

93.372

0.597
  recA Streptococcus pyogenes NZ131

63.889

93.372

0.597
  recA Neisseria gonorrhoeae strain FA1090

63.889

93.372

0.597
  recA Neisseria gonorrhoeae MS11

63.889

93.372

0.597
  recA Lactococcus lactis subsp. cremoris KW2

63.497

93.948

0.597
  recA Acinetobacter baumannii D1279779

59.942

98.559

0.591
  recA Helicobacter pylori strain NCTC11637

62.08

94.236

0.585
  recA Helicobacter pylori 26695

61.774

94.236

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.398

94.813

0.582
  recA Ralstonia pseudosolanacearum GMI1000

64.63

89.625

0.579
  recA Pseudomonas stutzeri DSM 10701

61.162

94.236

0.576
  recA Glaesserella parasuis strain SC1401

60.559

92.795

0.562
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.485

95.101

0.556
  recA Vibrio cholerae strain A1552

58.485

95.101

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.462

93.66

0.548

Multiple sequence alignment