Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E2E30_RS07055 Genome accession   NZ_CP037913
Coordinates   1561426..1562502 (-) Length   358 a.a.
NCBI ID   WP_010186772.1    Uniprot ID   -
Organism   Sphingomonas sp. AAP5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1556426..1567502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2E30_RS07035 (E2E30_07035) - 1556722..1557486 (-) 765 WP_133188524.1 hypothetical protein -
  E2E30_RS07040 (E2E30_07040) - 1557558..1558844 (-) 1287 WP_133188526.1 Xaa-Pro peptidase family protein -
  E2E30_RS07045 (E2E30_07045) - 1558978..1560285 (+) 1308 WP_133188528.1 dicarboxylate/amino acid:cation symporter -
  E2E30_RS07050 (E2E30_07050) - 1560424..1561056 (-) 633 WP_133188530.1 glutathione S-transferase -
  E2E30_RS07055 (E2E30_07055) recA 1561426..1562502 (-) 1077 WP_010186772.1 recombinase RecA Machinery gene
  E2E30_RS07060 (E2E30_07060) - 1562670..1563551 (-) 882 WP_206365695.1 SDR family oxidoreductase -
  E2E30_RS07065 (E2E30_07065) - 1563775..1564140 (-) 366 WP_133188534.1 response regulator -
  E2E30_RS07070 (E2E30_07070) - 1564178..1566583 (-) 2406 WP_133188536.1 response regulator -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38520.07 Da        Isoelectric Point: 5.5641

>NTDB_id=350614 E2E30_RS07055 WP_010186772.1 1561426..1562502(-) (recA) [Sphingomonas sp. AAP5]
MAASTDKAAEKAKDERAKALEAALAQIDRAFGKGSAMKLGSKQTMQVEVISTGSLGLDIALGVGGLPRGRVIEIYGPESS
GKTTLALHVIAEAQKTGGTAAFVDAEHALDPVYAKKLGVNIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVAALV
PRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQ
IKDRDEIIGNTTRVKVVKNKVAPPFKQVEFDIMYGQGVSKIGEILDLGVKAGLVEKSGAWFSYDSVRIGQGRENSKTFLK
EHPEMSDRLEASIRARTDKVAEEMMVGGEPDDGDEPEM

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=350614 E2E30_RS07055 WP_010186772.1 1561426..1562502(-) (recA) [Sphingomonas sp. AAP5]
ATGGCAGCATCCACGGACAAGGCCGCCGAAAAGGCCAAGGACGAACGCGCAAAGGCGCTCGAGGCAGCGCTCGCGCAGAT
CGATCGCGCGTTCGGCAAGGGCTCGGCGATGAAGCTCGGGTCGAAGCAGACGATGCAGGTCGAGGTGATCTCGACCGGCT
CGCTCGGGCTCGACATCGCGCTCGGCGTCGGCGGCTTGCCGCGCGGGCGCGTGATCGAGATTTACGGTCCCGAATCGTCG
GGCAAGACGACGCTCGCGCTCCACGTGATCGCGGAAGCGCAGAAGACCGGCGGCACCGCGGCGTTCGTCGACGCCGAACA
CGCTCTCGATCCCGTCTATGCCAAGAAGCTCGGCGTCAACATCGACGAGCTGATCGTCTCGCAGCCCGACACGGGCGAGC
AGGCGCTCGAGATCGTCGACACGCTGGTGCGCTCGAACGCGATCGACGTGCTTGTCGTCGATTCGGTCGCGGCCTTGGTG
CCGCGCGCTGAAATCGAGGGCGAGATGGGCGACAGCCATGTCGGCCTGCAGGCGCGCTTGATGTCGCAGAGCTTGCGGAA
ACTGACCGGCTCGATCAGCCGCTCGCGCTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGTACG
GCAACCCCGAGACGACGACCGGCGGCAACGCGCTCAAGTTCTACGCCTCGGTCCGCCTCGACATCCGCCGCACCGGGCAG
ATCAAGGATCGCGACGAGATCATCGGCAACACGACGCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCGTTCAAGCA
GGTCGAATTCGACATCATGTACGGGCAGGGCGTGTCGAAGATCGGCGAGATCCTCGATCTCGGCGTCAAGGCCGGGCTGG
TCGAGAAGTCGGGCGCGTGGTTCTCCTACGACAGCGTCCGCATCGGCCAGGGCCGCGAGAATTCGAAGACGTTCCTCAAG
GAACATCCCGAAATGTCCGACCGGCTCGAAGCCTCGATCCGCGCGCGCACCGACAAGGTTGCCGAGGAAATGATGGTCGG
CGGCGAGCCCGACGACGGGGACGAGCCCGAGATGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae strain FA1090

67.435

96.927

0.654
  recA Neisseria gonorrhoeae MS11

67.435

96.927

0.654
  recA Neisseria gonorrhoeae MS11

67.435

96.927

0.654
  recA Vibrio cholerae strain A1552

64.957

98.045

0.637
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.957

98.045

0.637
  recA Glaesserella parasuis strain SC1401

65.507

96.369

0.631
  recA Pseudomonas stutzeri DSM 10701

69.35

90.223

0.626
  recA Acinetobacter baylyi ADP1

65.015

95.81

0.623
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.14

95.81

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.565

91.899

0.612
  recA Acinetobacter baumannii D1279779

62.286

97.765

0.609
  recA Ralstonia pseudosolanacearum GMI1000

70.455

86.034

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

65.625

89.385

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

64.506

90.503

0.584
  recA Helicobacter pylori strain NCTC11637

61.538

94.413

0.581
  recA Helicobacter pylori 26695

61.538

94.413

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.19

91.061

0.575
  recA Streptococcus pneumoniae Rx1

62.27

91.061

0.567
  recA Streptococcus pneumoniae D39

62.27

91.061

0.567
  recA Streptococcus pneumoniae R6

62.27

91.061

0.567
  recA Streptococcus pneumoniae TIGR4

62.27

91.061

0.567
  recA Streptococcus mitis NCTC 12261

60.299

93.575

0.564
  recA Streptococcus pyogenes NZ131

61.027

92.458

0.564
  recA Streptococcus mitis SK321

60

93.575

0.561
  recA Streptococcus mutans UA159

58.309

95.81

0.559
  recA Lactococcus lactis subsp. cremoris KW2

59.581

93.296

0.556

Multiple sequence alignment