Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DAIF1_RS07900 Genome accession   NZ_CP037883
Coordinates   1717909..1718946 (+) Length   345 a.a.
NCBI ID   WP_025878921.1    Uniprot ID   A0AAW4GID7
Organism   Stenotrophomonas indicatrix strain DAIF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1712909..1723946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAIF1_RS07875 (DAIF1_15620) hfq 1712951..1713226 (+) 276 WP_025878916.1 RNA chaperone Hfq -
  DAIF1_RS07880 (DAIF1_15630) hflX 1713241..1714551 (+) 1311 WP_025878917.1 ribosome rescue GTPase HflX -
  DAIF1_RS07885 (DAIF1_15640) - 1714648..1715142 (+) 495 WP_088101362.1 nicotinamide-nucleotide amidohydrolase family protein -
  DAIF1_RS07890 (DAIF1_15650) ubiB 1715178..1716860 (+) 1683 WP_025878919.1 2-polyprenylphenol 6-hydroxylase -
  DAIF1_RS07895 (DAIF1_15660) lexA 1717072..1717707 (+) 636 WP_025878920.1 transcriptional repressor LexA -
  DAIF1_RS07900 (DAIF1_15670) recA 1717909..1718946 (+) 1038 WP_025878921.1 recombinase RecA Machinery gene
  DAIF1_RS07905 (DAIF1_15680) recX 1719057..1719548 (+) 492 WP_025878922.1 recombination regulator RecX -
  DAIF1_RS07910 (DAIF1_15690) alaS 1719654..1722302 (+) 2649 WP_134832290.1 alanine--tRNA ligase -
  DAIF1_RS07915 (DAIF1_15700) csrA 1722451..1722654 (+) 204 WP_025878924.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37201.71 Da        Isoelectric Point: 4.7736

>NTDB_id=350430 DAIF1_RS07900 WP_025878921.1 1717909..1718946(+) (recA) [Stenotrophomonas indicatrix strain DAIF1]
MDENKKRALAAALGQIEKQFGKGSVMRMGDRVVEPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKLGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGEERIGQGKDNARGYLRDNPQVAAKL
EAELREKFQPTEAVREEGEDEGDDE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=350430 DAIF1_RS07900 WP_025878921.1 1717909..1718946(+) (recA) [Stenotrophomonas indicatrix strain DAIF1]
ATGGACGAGAACAAGAAGCGCGCCCTCGCTGCAGCTCTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGCGTGGTCGAGCCCGTCGAGGCGATCCCGACCGGTTCTCTGATGCTGGATATCGCATTGGGCATTGGTG
GCCTGCCCAAGGGCCGCGTGGTGGAAATCTACGGTCCGGAATCCTCCGGCAAGACCACGTTGACCCTGCAGGCCATCGCC
GAGTGCCAGAAGCTGGGTGGCACCGCCGCCTTCATCGATGCCGAGCACGCGCTGGACCCGATCTACGCAGGCAAGCTGGG
CGTCAATGTCGACGATCTGCTGCTGTCGCAGCCGGATACCGGTGAGCAGGCGCTTGAAATCGCCGACATGCTGGTGCGCT
CCGGTTCGGTGGACATCCTGGTGGTCGACTCGGTCGCCGCGTTGACCCCCAAGGCTGAAATCGAAGGTGAGATGGGCGAC
CAGTTGCCGGGTCTGCAGGCGCGTCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCTCGAACACCCT
GGTGGTGTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ACGCGCTGAAGTTCTATGCCTCGGTGCGCCTGGACATCCGCCGTATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGCTGGCGCCCCCGTTCAAGCAGGTCATCACCGAGATCCTGTACGGCGA
AGGCATCAGCCGCGAAGGCGAGCTGATCGATATGGGTGTCGAAGCCAAGCTGGTCGAGAAGGCCGGTGCCTGGTACAGCT
ACGGTGAAGAGCGCATCGGCCAGGGCAAGGACAACGCCCGTGGCTATCTGCGCGACAACCCGCAGGTTGCCGCCAAGCTT
GAGGCTGAGCTGCGCGAGAAGTTCCAGCCGACCGAAGCCGTCCGTGAGGAAGGCGAAGACGAAGGCGACGACGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

70.52

100

0.707
  recA Acinetobacter baylyi ADP1

70.145

100

0.701
  recA Ralstonia pseudosolanacearum GMI1000

76.266

91.594

0.699
  recA Pseudomonas stutzeri DSM 10701

72.372

96.522

0.699
  recA Vibrio cholerae strain A1552

71.779

94.493

0.678
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.779

94.493

0.678
  recA Neisseria gonorrhoeae MS11

65.896

100

0.661
  recA Neisseria gonorrhoeae MS11

65.896

100

0.661
  recA Neisseria gonorrhoeae strain FA1090

65.896

100

0.661
  recA Glaesserella parasuis strain SC1401

65.407

99.71

0.652
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.174

96.812

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.756

99.71

0.606
  recA Latilactobacillus sakei subsp. sakei 23K

63.497

94.493

0.6
  recA Bacillus subtilis subsp. subtilis str. 168

62.769

94.203

0.591
  recA Helicobacter pylori strain NCTC11637

60.778

96.812

0.588
  recA Helicobacter pylori 26695

60.18

96.812

0.583
  recA Streptococcus mitis SK321

60.366

95.072

0.574
  recA Streptococcus pyogenes NZ131

59.697

95.652

0.571
  recA Streptococcus mutans UA159

59.394

95.652

0.568
  recA Streptococcus pneumoniae Rx1

59.756

95.072

0.568
  recA Streptococcus pneumoniae D39

59.756

95.072

0.568
  recA Streptococcus pneumoniae R6

59.756

95.072

0.568
  recA Streptococcus pneumoniae TIGR4

59.756

95.072

0.568
  recA Streptococcus mitis NCTC 12261

59.756

95.072

0.568
  recA Lactococcus lactis subsp. cremoris KW2

58.769

94.203

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.669

94.493

0.545

Multiple sequence alignment