Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E0L18_RS08170 Genome accession   NZ_CP037861
Coordinates   1636534..1637598 (+) Length   354 a.a.
NCBI ID   WP_139617524.1    Uniprot ID   -
Organism   Pasteurella multocida subsp. multocida strain HN01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1631534..1642598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0L18_RS08145 (E0L18_08150) leuB 1632203..1633282 (+) 1080 WP_005719468.1 3-isopropylmalate dehydrogenase -
  E0L18_RS08150 (E0L18_08155) leuC 1633546..1634952 (+) 1407 WP_139617522.1 3-isopropylmalate dehydratase large subunit -
  E0L18_RS08160 (E0L18_08165) leuD 1635205..1635810 (+) 606 WP_005719457.1 3-isopropylmalate dehydratase small subunit -
  E0L18_RS08165 (E0L18_08170) - 1636134..1636508 (+) 375 WP_255303001.1 pyridoxamine 5'-phosphate oxidase family protein -
  E0L18_RS08170 (E0L18_08175) recA 1636534..1637598 (+) 1065 WP_139617524.1 recombinase RecA Machinery gene
  E0L18_RS08175 (E0L18_08180) recX 1637708..1638163 (+) 456 WP_139617525.1 recombination regulator RecX -
  E0L18_RS08180 (E0L18_08185) - 1638293..1639558 (-) 1266 WP_139617526.1 heme biosynthesis protein HemY -
  E0L18_RS08185 (E0L18_08190) - 1639571..1640971 (-) 1401 WP_139617527.1 uroporphyrinogen-III C-methyltransferase -
  E0L18_RS08190 (E0L18_08195) - 1641012..1641758 (-) 747 WP_139617528.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37917.51 Da        Isoelectric Point: 5.1794

>NTDB_id=350258 E0L18_RS08170 WP_139617524.1 1636534..1637598(+) (recA) [Pasteurella multocida subsp. multocida strain HN01]
MATKEEKNKALAAALGQIEKQFGKGSIMKLGDTQALDVEAVSTGSLSLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKEGKTCAFIDAEHALDPIYAAKLGVNVNELLVSQPDNGEQALEICDALVHSGAVDVIIVDSVAALTPKAEIEGEM
GDSHMGLQARLMSQALRKLTGQIKNSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVIG
NETRVKVVKNKVAAPFRQVDFQILYGQGISKTGELIELGVKHKLVDKAGAWYAYNGEKIGQGKANAMKWLEEHPEEALAL
ETKLRNELLANPEKVLAADIAEKNESSTGLETDY

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=350258 E0L18_RS08170 WP_139617524.1 1636534..1637598(+) (recA) [Pasteurella multocida subsp. multocida strain HN01]
ATGGCAACAAAAGAAGAAAAAAATAAAGCACTGGCAGCAGCACTTGGGCAGATTGAAAAACAATTTGGTAAAGGCTCTAT
TATGAAATTGGGCGATACCCAAGCCTTGGATGTTGAAGCCGTGTCAACAGGCTCCTTAAGCCTCGACGTCGCACTTGGCA
TTGGCGGGTTACCAATGGGTCGTATTGTTGAAATTTTCGGGCCTGAATCTTCCGGTAAAACCACCTTAACCCTTTCTGTC
ATTGCACAAGCACAAAAAGAAGGCAAAACCTGTGCCTTTATTGACGCAGAACACGCATTAGATCCCATTTATGCCGCCAA
ACTGGGCGTCAATGTGAATGAACTGTTAGTTTCCCAACCTGATAACGGTGAACAAGCGCTCGAAATCTGCGATGCGTTGG
TGCATTCAGGTGCAGTAGATGTGATCATTGTGGACTCAGTCGCAGCATTAACCCCGAAAGCGGAAATTGAAGGGGAAATG
GGTGACTCACACATGGGCTTACAAGCACGTTTGATGTCACAAGCATTACGTAAACTCACTGGACAAATCAAAAACTCAAA
TTGCTTAGTGGTCTTTATTAACCAAATCCGTATGAAAATTGGTGTCATGTTCGGTAACCCAGAAACCACAACAGGGGGGA
ATGCACTGAAATTCTATGCCTCTGTACGTTTAGATATTCGCCGTACGGGTGCGATTAAAGAAGGTGAAGAAGTGATCGGT
AACGAAACTCGTGTCAAAGTGGTGAAAAATAAAGTTGCGGCACCATTCCGTCAAGTAGATTTCCAAATTCTTTACGGTCA
AGGTATTTCTAAAACAGGTGAGCTCATCGAGTTAGGCGTAAAACACAAATTAGTGGATAAAGCAGGTGCATGGTACGCTT
ACAATGGTGAAAAAATCGGTCAAGGTAAAGCTAACGCGATGAAATGGTTAGAAGAGCATCCTGAAGAAGCATTGGCTTTA
GAAACGAAATTACGCAATGAGTTGCTCGCGAATCCAGAAAAAGTACTCGCGGCAGATATTGCAGAAAAAAATGAAAGCTC
TACGGGCTTAGAAACGGATTATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

80.665

93.503

0.754
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.665

93.503

0.754
  recA Glaesserella parasuis strain SC1401

76.093

96.893

0.737
  recA Pseudomonas stutzeri DSM 10701

74.852

95.48

0.715
  recA Acinetobacter baylyi ADP1

71.257

94.35

0.672
  recA Neisseria gonorrhoeae MS11

72.671

90.96

0.661
  recA Neisseria gonorrhoeae MS11

72.671

90.96

0.661
  recA Neisseria gonorrhoeae strain FA1090

72.671

90.96

0.661
  recA Acinetobacter baumannii D1279779

72

91.808

0.661
  recA Ralstonia pseudosolanacearum GMI1000

72.698

88.983

0.647
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.048

93.785

0.582
  recA Helicobacter pylori strain NCTC11637

60.651

95.48

0.579
  recA Streptococcus pneumoniae D39

58.841

97.458

0.573
  recA Streptococcus pneumoniae R6

58.841

97.458

0.573
  recA Streptococcus pneumoniae TIGR4

58.841

97.458

0.573
  recA Streptococcus pneumoniae Rx1

58.841

97.458

0.573
  recA Streptococcus mitis NCTC 12261

57.345

100

0.573
  recA Helicobacter pylori 26695

60.059

95.48

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.154

91.808

0.571
  recA Streptococcus mutans UA159

56.941

99.718

0.568
  recA Bacillus subtilis subsp. subtilis str. 168

62.813

90.395

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.162

92.373

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.559

90.96

0.551
  recA Streptococcus mitis SK321

60.185

91.525

0.551
  recA Streptococcus pyogenes NZ131

59.692

91.808

0.548
  recA Lactococcus lactis subsp. cremoris KW2

58.951

91.525

0.54

Multiple sequence alignment